scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B7,4 Lung Primary cancer 1,281 Stromal 26.5% 0.69 0.71
NSCLC_38242124__IMC__178_B7,5 Lung Primary cancer 2,201 Tumor/Malignant 58.7% 0.99 0.05
NSCLC_38242124__IMC__178_B7,6 Lung Primary cancer 2,414 Stromal 42.1% 0.79 0.49
NSCLC_38242124__IMC__178_B7,7 Lung Primary cancer 2,876 Tumor/Malignant 36.9% 0.89 0.40
NSCLC_38242124__IMC__178_B7,8 Lung Primary cancer 2,600 Immune 44.3% 0.95 0.11
NSCLC_38242124__IMC__178_B7,9 Lung Primary cancer 2,119 Tumor/Malignant 45.9% 0.99 0.07
NSCLC_38242124__IMC__178_B8,1 Lung Primary cancer 3,277 Other 55.3% 0.99 0.09
NSCLC_38242124__IMC__178_B8,10 Lung Primary cancer 3,527 Tumor/Malignant 87.2% 0.99 0.05
NSCLC_38242124__IMC__178_B8,11 Lung Primary cancer 2,913 Stromal 22.5% 0.77 0.57
NSCLC_38242124__IMC__178_B8,12 Lung Primary cancer 2,491 Tumor/Malignant 36.7% 0.93 0.25
NSCLC_38242124__IMC__178_B8,13 Lung Primary cancer 2,771 Tumor/Malignant 48.1% 0.93 0.24
NSCLC_38242124__IMC__178_B8,14 Lung Primary cancer 2,332 Tumor/Malignant 37.8% 0.99 0.05
NSCLC_38242124__IMC__178_B8,15 Lung Primary cancer 3,120 Tumor/Malignant 31.6% 0.85 0.35
NSCLC_38242124__IMC__178_B8,16 Lung Primary cancer 2,738 Tumor/Malignant 53.8% 0.94 0.23
NSCLC_38242124__IMC__178_B8,17 Lung Primary cancer 1,975 Tumor/Malignant 31.4% 0.73 0.66
NSCLC_38242124__IMC__178_B8,18 Lung Primary cancer 2,028 Stromal 40.5% 0.55 0.83
NSCLC_38242124__IMC__178_B8,3 Lung Primary cancer 3,681 Tumor/Malignant 31.6% 0.90 0.31
NSCLC_38242124__IMC__178_B8,4 Lung Primary cancer 2,084 Immune 27.4% 0.85 0.36
NSCLC_38242124__IMC__178_B8,5 Lung Primary cancer 28 Tumor/Malignant 64.3% 0.56 0.79
NSCLC_38242124__IMC__178_B8,6 Lung Primary cancer 4,954 Tumor/Malignant 98.5% 1.00 0.01

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B7,4 Lung Primary cancer 1,281 Stromal 25.4% 0.37 1.00
NSCLC_38242124__IMC__178_B7,5 Lung Primary cancer 2,201 Tumor/Malignant 55.1% 0.99 0.05
NSCLC_38242124__IMC__178_B7,6 Lung Primary cancer 2,414 Stromal 35.1% 0.83 0.44
NSCLC_38242124__IMC__178_B7,7 Lung Primary cancer 2,876 Tumor/Malignant 32.9% 0.54 0.81
NSCLC_38242124__IMC__178_B7,8 Lung Primary cancer 2,600 Myeloid 41.8% 0.97 0.09
NSCLC_38242124__IMC__178_B7,9 Lung Primary cancer 2,119 Tumor/Malignant 44.6% 0.99 0.06
NSCLC_38242124__IMC__178_B8,1 Lung Primary cancer 3,277 Other 54.6% 0.99 0.08
NSCLC_38242124__IMC__178_B8,10 Lung Primary cancer 3,527 Tumor/Malignant 83.0% 1.00 0.02
NSCLC_38242124__IMC__178_B8,11 Lung Primary cancer 2,913 Stromal 19.2% 0.79 0.57
NSCLC_38242124__IMC__178_B8,12 Lung Primary cancer 2,491 Tumor/Malignant 34.2% 0.95 0.21
NSCLC_38242124__IMC__178_B8,13 Lung Primary cancer 2,771 Tumor/Malignant 39.3% 0.96 0.17
NSCLC_38242124__IMC__178_B8,14 Lung Primary cancer 2,332 Tumor/Malignant 37.6% 0.99 0.05
NSCLC_38242124__IMC__178_B8,15 Lung Primary cancer 3,120 Myeloid 30.9% 0.78 0.50
NSCLC_38242124__IMC__178_B8,16 Lung Primary cancer 2,738 Tumor/Malignant 42.4% 0.98 0.12
NSCLC_38242124__IMC__178_B8,17 Lung Primary cancer 1,975 Tumor/Malignant 26.2% 0.42 0.99
NSCLC_38242124__IMC__178_B8,18 Lung Primary cancer 2,028 Stromal 33.9% 0.55 0.90
NSCLC_38242124__IMC__178_B8,3 Lung Primary cancer 3,681 Tumor/Malignant 28.2% 0.73 0.65
NSCLC_38242124__IMC__178_B8,4 Lung Primary cancer 2,084 Stromal 28.7% 0.42 0.93
NSCLC_38242124__IMC__178_B8,5 Lung Primary cancer 28 Tumor/Malignant 64.3% 0.56 0.79
NSCLC_38242124__IMC__178_B8,6 Lung Primary cancer 4,954 Tumor/Malignant 98.5% 1.00 0.01

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_B7,4 Lung Primary cancer 1,281 Fibroblast 26.4% 0.58 0.86
NSCLC_38242124__IMC__178_B7,5 Lung Primary cancer 2,201 Tumor/Malignant cell 58.7% 0.99 0.05
NSCLC_38242124__IMC__178_B7,6 Lung Primary cancer 2,414 Fibroblast 39.9% 0.80 0.48
NSCLC_38242124__IMC__178_B7,7 Lung Primary cancer 2,876 Tumor/Malignant cell 37.7% 0.88 0.41
NSCLC_38242124__IMC__178_B7,8 Lung Primary cancer 2,600 Granulocyte 44.1% 0.95 0.13
NSCLC_38242124__IMC__178_B7,9 Lung Primary cancer 2,119 Tumor/Malignant cell 61.4% 0.93 0.21
NSCLC_38242124__IMC__178_B8,1 Lung Primary cancer 3,277 Other 57.2% 0.98 0.10
NSCLC_38242124__IMC__178_B8,10 Lung Primary cancer 3,527 Tumor/Malignant cell 87.1% 0.99 0.05
NSCLC_38242124__IMC__178_B8,11 Lung Primary cancer 2,913 Fibroblast 25.0% 0.71 0.69
NSCLC_38242124__IMC__178_B8,12 Lung Primary cancer 2,491 Tumor/Malignant cell 39.6% 0.91 0.30
NSCLC_38242124__IMC__178_B8,13 Lung Primary cancer 2,771 Tumor/Malignant cell 48.9% 0.93 0.25
NSCLC_38242124__IMC__178_B8,14 Lung Primary cancer 2,332 Tumor/Malignant cell 58.3% 0.95 0.20
NSCLC_38242124__IMC__178_B8,15 Lung Primary cancer 3,120 Tumor/Malignant cell 40.4% 0.82 0.45
NSCLC_38242124__IMC__178_B8,16 Lung Primary cancer 2,738 Tumor/Malignant cell 54.7% 0.93 0.24
NSCLC_38242124__IMC__178_B8,17 Lung Primary cancer 1,975 Tumor/Malignant cell 34.1% 0.70 0.69
NSCLC_38242124__IMC__178_B8,18 Lung Primary cancer 2,028 Fibroblast 35.1% 0.68 0.74
NSCLC_38242124__IMC__178_B8,3 Lung Primary cancer 3,681 Tumor/Malignant cell 43.5% 0.84 0.44
NSCLC_38242124__IMC__178_B8,4 Lung Primary cancer 2,084 Myeloid cell, unspecified 25.8% 0.84 0.39
NSCLC_38242124__IMC__178_B8,5 Lung Primary cancer 28 Tumor/Malignant cell 64.3% 0.56 0.79
NSCLC_38242124__IMC__178_B8,6 Lung Primary cancer 4,954 Tumor/Malignant cell 98.5% 1.00 0.01