scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B7,4 Lung Primary cancer 1,281 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B7,5 Lung Primary cancer 2,201 0.44 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B7,6 Lung Primary cancer 2,414 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,7 Lung Primary cancer 2,876 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,8 Lung Primary cancer 2,600 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B7,9 Lung Primary cancer 2,119 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,1 Lung Primary cancer 3,277 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B8,10 Lung Primary cancer 3,527 0.07 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B8,11 Lung Primary cancer 2,913 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,12 Lung Primary cancer 2,491 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,13 Lung Primary cancer 2,771 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,14 Lung Primary cancer 2,332 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,15 Lung Primary cancer 3,120 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,16 Lung Primary cancer 2,738 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,17 Lung Primary cancer 1,975 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,18 Lung Primary cancer 2,028 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,3 Lung Primary cancer 3,681 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,4 Lung Primary cancer 2,084 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,5 Lung Primary cancer 28 0.02 0.25 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B8,6 Lung Primary cancer 4,954 0.00 0.06 Homogeneous Weakly segregated

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B7,4 Lung Primary cancer 1,281 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B7,5 Lung Primary cancer 2,201 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B7,6 Lung Primary cancer 2,414 0.21 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,7 Lung Primary cancer 2,876 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B7,8 Lung Primary cancer 2,600 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B7,9 Lung Primary cancer 2,119 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,1 Lung Primary cancer 3,277 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B8,10 Lung Primary cancer 3,527 0.07 0.04 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B8,11 Lung Primary cancer 2,913 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,12 Lung Primary cancer 2,491 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,13 Lung Primary cancer 2,771 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,14 Lung Primary cancer 2,332 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,15 Lung Primary cancer 3,120 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,16 Lung Primary cancer 2,738 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,17 Lung Primary cancer 1,975 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,18 Lung Primary cancer 2,028 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,3 Lung Primary cancer 3,681 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,4 Lung Primary cancer 2,084 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,5 Lung Primary cancer 28 0.02 0.25 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B8,6 Lung Primary cancer 4,954 0.00 0.06 Homogeneous Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B7,4 Lung Primary cancer 1,281 0.11 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B7,5 Lung Primary cancer 2,201 0.44 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B7,6 Lung Primary cancer 2,414 0.21 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,7 Lung Primary cancer 2,876 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B7,8 Lung Primary cancer 2,600 0.46 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B7,9 Lung Primary cancer 2,119 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,1 Lung Primary cancer 3,277 0.05 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B8,10 Lung Primary cancer 3,527 0.07 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_B8,11 Lung Primary cancer 2,913 0.29 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,12 Lung Primary cancer 2,491 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,13 Lung Primary cancer 2,771 0.18 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,14 Lung Primary cancer 2,332 0.15 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,15 Lung Primary cancer 3,120 0.24 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,16 Lung Primary cancer 2,738 0.31 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,17 Lung Primary cancer 1,975 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,18 Lung Primary cancer 2,028 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,3 Lung Primary cancer 3,681 0.28 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,4 Lung Primary cancer 2,084 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,5 Lung Primary cancer 28 0.02 0.25 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_B8,6 Lung Primary cancer 4,954 0.00 0.06 Homogeneous Weakly segregated