scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B8,7 Lung Primary cancer 2,258 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,8 Lung Primary cancer 3,572 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B8,9 Lung Primary cancer 2,029 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,1 Lung Primary cancer 3,156 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,10 Lung Primary cancer 427 0.46 0.28 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_C1,13 Lung Primary cancer 2,871 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,14 Lung Primary cancer 820 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,15 Lung Primary cancer 1,425 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,16 Lung Primary cancer 833 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,17 Lung Primary cancer 5,784 0.04 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,18 Lung Primary cancer 296 0.16 -0.01 Weakly structured Neutral
NSCLC_38242124__IMC__178_C1,2 Lung Primary cancer 2,430 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,3 Lung Primary cancer 2,911 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,6 Lung Primary cancer 20 0.04 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,7 Lung Primary cancer 2,737 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,8 Lung Primary cancer 1,107 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,9 Lung Primary cancer 799 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,1 Lung Primary cancer 1,847 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,10 Lung Primary cancer 3,482 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,11 Lung Primary cancer 3,801 0.34 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B8,7 Lung Primary cancer 2,258 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_B8,8 Lung Primary cancer 3,572 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_B8,9 Lung Primary cancer 2,029 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,1 Lung Primary cancer 3,156 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,10 Lung Primary cancer 427 0.46 0.28 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_C1,13 Lung Primary cancer 2,871 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,14 Lung Primary cancer 820 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,15 Lung Primary cancer 1,425 0.12 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,16 Lung Primary cancer 833 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,17 Lung Primary cancer 5,784 0.05 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,18 Lung Primary cancer 296 0.16 -0.01 Weakly structured Neutral
NSCLC_38242124__IMC__178_C1,2 Lung Primary cancer 2,430 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,3 Lung Primary cancer 2,911 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,6 Lung Primary cancer 20 0.04 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,7 Lung Primary cancer 2,737 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,8 Lung Primary cancer 1,107 0.10 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,9 Lung Primary cancer 799 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,1 Lung Primary cancer 1,847 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,10 Lung Primary cancer 3,482 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,11 Lung Primary cancer 3,801 0.34 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_B8,7 Lung Primary cancer 2,258 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_B8,8 Lung Primary cancer 3,572 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__178_B8,9 Lung Primary cancer 2,029 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C1,1 Lung Primary cancer 3,156 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C1,10 Lung Primary cancer 427 0.46 0.28 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__178_C1,13 Lung Primary cancer 2,871 0.23 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C1,14 Lung Primary cancer 820 0.11 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,15 Lung Primary cancer 1,425 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C1,16 Lung Primary cancer 833 0.08 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,17 Lung Primary cancer 5,784 0.15 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,18 Lung Primary cancer 296 0.16 -0.01 Weakly structured Neutral
NSCLC_38242124__IMC__178_C1,2 Lung Primary cancer 2,430 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C1,3 Lung Primary cancer 2,911 0.31 0.16 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C1,6 Lung Primary cancer 20 0.04 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,7 Lung Primary cancer 2,737 0.25 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C1,8 Lung Primary cancer 1,107 0.11 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C1,9 Lung Primary cancer 799 0.26 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,1 Lung Primary cancer 1,847 0.27 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,10 Lung Primary cancer 3,482 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,11 Lung Primary cancer 3,801 0.34 0.11 Weakly structured Weakly segregated