scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_C2,13 Lung Primary cancer 3,017 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,14 Lung Primary cancer 648 0.06 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C2,15 Lung Primary cancer 513 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C2,16 Lung Primary cancer 1,161 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,17 Lung Primary cancer 4,878 0.12 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C2,3 Lung Primary cancer 1,462 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,4 Lung Primary cancer 2,930 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,5 Lung Primary cancer 2,052 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,7 Lung Primary cancer 2,504 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,8 Lung Primary cancer 1,063 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C2,9 Lung Primary cancer 1,691 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,1 Lung Primary cancer 491 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,10 Lung Primary cancer 3,872 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C3,12 Lung Primary cancer 1,491 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C3,13 Lung Primary cancer 1,139 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,14 Lung Primary cancer 1,703 0.03 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,17 Lung Primary cancer 5,795 0.03 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,18 Lung Primary cancer 4,246 0.02 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C3,2 Lung Primary cancer 403 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C3,4 Lung Primary cancer 4,062 0.20 0.10 Weakly structured Weakly segregated

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_C2,13 Lung Primary cancer 3,017 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,14 Lung Primary cancer 648 0.06 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C2,15 Lung Primary cancer 513 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C2,16 Lung Primary cancer 1,161 0.18 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,17 Lung Primary cancer 4,878 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C2,3 Lung Primary cancer 1,462 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,4 Lung Primary cancer 2,930 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,5 Lung Primary cancer 2,052 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,7 Lung Primary cancer 2,504 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,8 Lung Primary cancer 1,063 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C2,9 Lung Primary cancer 1,691 0.15 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C3,1 Lung Primary cancer 491 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,10 Lung Primary cancer 3,872 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C3,12 Lung Primary cancer 1,491 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C3,13 Lung Primary cancer 1,139 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,14 Lung Primary cancer 1,703 0.03 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,17 Lung Primary cancer 5,795 0.04 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C3,18 Lung Primary cancer 4,246 0.02 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C3,2 Lung Primary cancer 403 0.29 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C3,4 Lung Primary cancer 4,062 0.24 0.10 Weakly structured Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_C2,13 Lung Primary cancer 3,017 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,14 Lung Primary cancer 648 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C2,15 Lung Primary cancer 513 0.15 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C2,16 Lung Primary cancer 1,161 0.18 0.16 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C2,17 Lung Primary cancer 4,878 0.17 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,3 Lung Primary cancer 1,462 0.34 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,4 Lung Primary cancer 2,930 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,5 Lung Primary cancer 2,052 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,7 Lung Primary cancer 2,504 0.30 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C2,8 Lung Primary cancer 1,063 0.09 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C2,9 Lung Primary cancer 1,691 0.17 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C3,1 Lung Primary cancer 491 0.09 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C3,10 Lung Primary cancer 3,872 0.34 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C3,12 Lung Primary cancer 1,491 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C3,13 Lung Primary cancer 1,139 0.12 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C3,14 Lung Primary cancer 1,703 0.03 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C3,17 Lung Primary cancer 5,795 0.10 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C3,18 Lung Primary cancer 4,246 0.02 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C3,2 Lung Primary cancer 403 0.29 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C3,4 Lung Primary cancer 4,062 0.24 0.10 Weakly structured Weakly segregated