scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_C5,11 Lung Primary cancer 4,483 Stromal 46.0% 0.75 0.51
NSCLC_38242124__IMC__178_C5,12 Lung Primary cancer 5 Not ready NA NA NA
NSCLC_38242124__IMC__178_C5,13 Lung Primary cancer 1,856 Tumor/Malignant 33.4% 0.83 0.47
NSCLC_38242124__IMC__178_C5,16 Lung Primary cancer 1,984 Immune 95.1% 1.00 0.02
NSCLC_38242124__IMC__178_C5,17 Lung Primary cancer 1,276 Other 48.4% 1.00 0.02
NSCLC_38242124__IMC__178_C5,2 Lung Primary cancer 2,065 Tumor/Malignant 43.7% 0.89 0.28
NSCLC_38242124__IMC__178_C5,3 Lung Primary cancer 2,893 Stromal 30.1% 0.85 0.45
NSCLC_38242124__IMC__178_C5,4 Lung Primary cancer 3,222 Tumor/Malignant 33.2% 0.95 0.19
NSCLC_38242124__IMC__178_C5,7 Lung Primary cancer 1,165 Tumor/Malignant 28.4% 0.72 0.54
NSCLC_38242124__IMC__178_C5,8 Lung Primary cancer 2,625 Tumor/Malignant 75.4% 0.98 0.08
NSCLC_38242124__IMC__178_C5,9 Lung Primary cancer 84 Tumor/Malignant 69.0% 0.74 0.45
NSCLC_38242124__IMC__178_C6,1 Lung Primary cancer 3,188 Immune 35.4% 0.94 0.19
NSCLC_38242124__IMC__178_C6,10 Lung Primary cancer 3,397 Stromal 39.9% 0.88 0.31
NSCLC_38242124__IMC__178_C6,13 Lung Primary cancer 2,797 Tumor/Malignant 55.0% 0.99 0.04
NSCLC_38242124__IMC__178_C6,15 Lung Primary cancer 2,501 Tumor/Malignant 26.8% 0.49 0.93
NSCLC_38242124__IMC__178_C6,16 Lung Primary cancer 6,911 Immune 86.2% 1.00 0.02
NSCLC_38242124__IMC__178_C6,17 Lung Primary cancer 884 Tumor/Malignant 63.1% 1.00 0.01
NSCLC_38242124__IMC__178_C6,2 Lung Primary cancer 3,041 Tumor/Malignant 76.6% 0.97 0.08
NSCLC_38242124__IMC__178_C6,4 Lung Primary cancer 3,154 Immune 28.3% 0.46 0.88
NSCLC_38242124__IMC__178_C6,5 Lung Primary cancer 3,116 Tumor/Malignant 34.5% 0.90 0.34

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_C5,11 Lung Primary cancer 4,483 Stromal 41.7% 0.76 0.53
NSCLC_38242124__IMC__178_C5,12 Lung Primary cancer 5 Not ready NA NA NA
NSCLC_38242124__IMC__178_C5,13 Lung Primary cancer 1,856 Tumor/Malignant 28.2% 0.86 0.40
NSCLC_38242124__IMC__178_C5,16 Lung Primary cancer 1,984 Lymphoid 68.2% 1.00 0.01
NSCLC_38242124__IMC__178_C5,17 Lung Primary cancer 1,276 Other 48.4% 1.00 0.02
NSCLC_38242124__IMC__178_C5,2 Lung Primary cancer 2,065 Tumor/Malignant 35.8% 0.93 0.19
NSCLC_38242124__IMC__178_C5,3 Lung Primary cancer 2,893 Tumor/Malignant 27.1% 0.93 0.21
NSCLC_38242124__IMC__178_C5,4 Lung Primary cancer 3,222 Tumor/Malignant 34.4% 0.95 0.21
NSCLC_38242124__IMC__178_C5,7 Lung Primary cancer 1,165 Lymphoid 23.2% 0.71 0.68
NSCLC_38242124__IMC__178_C5,8 Lung Primary cancer 2,625 Tumor/Malignant 64.3% 1.00 0.03
NSCLC_38242124__IMC__178_C5,9 Lung Primary cancer 84 Tumor/Malignant 69.0% 0.74 0.45
NSCLC_38242124__IMC__178_C6,1 Lung Primary cancer 3,188 Lymphoid 30.8% 0.94 0.21
NSCLC_38242124__IMC__178_C6,10 Lung Primary cancer 3,397 Stromal 29.9% 0.91 0.26
NSCLC_38242124__IMC__178_C6,13 Lung Primary cancer 2,797 Tumor/Malignant 57.1% 0.99 0.05
NSCLC_38242124__IMC__178_C6,15 Lung Primary cancer 2,501 Tumor/Malignant 26.4% 0.42 1.02
NSCLC_38242124__IMC__178_C6,16 Lung Primary cancer 6,911 Lymphoid 91.6% 0.99 0.05
NSCLC_38242124__IMC__178_C6,17 Lung Primary cancer 884 Tumor/Malignant 63.1% 1.00 0.01
NSCLC_38242124__IMC__178_C6,2 Lung Primary cancer 3,041 Tumor/Malignant 68.4% 0.99 0.03
NSCLC_38242124__IMC__178_C6,4 Lung Primary cancer 3,154 Other 21.3% 0.69 0.67
NSCLC_38242124__IMC__178_C6,5 Lung Primary cancer 3,116 Tumor/Malignant 33.9% 0.91 0.34

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_C5,11 Lung Primary cancer 4,483 Fibroblast 58.8% 0.90 0.29
NSCLC_38242124__IMC__178_C5,12 Lung Primary cancer 5 Not ready NA NA NA
NSCLC_38242124__IMC__178_C5,13 Lung Primary cancer 1,856 Tumor/Malignant cell 40.0% 0.79 0.52
NSCLC_38242124__IMC__178_C5,16 Lung Primary cancer 1,984 B cell 94.8% 0.96 0.10
NSCLC_38242124__IMC__178_C5,17 Lung Primary cancer 1,276 Other 83.5% 1.00 0.03
NSCLC_38242124__IMC__178_C5,2 Lung Primary cancer 2,065 Tumor/Malignant cell 44.7% 0.88 0.29
NSCLC_38242124__IMC__178_C5,3 Lung Primary cancer 2,893 Fibroblast 31.6% 0.77 0.60
NSCLC_38242124__IMC__178_C5,4 Lung Primary cancer 3,222 Tumor/Malignant cell 43.3% 0.90 0.35
NSCLC_38242124__IMC__178_C5,7 Lung Primary cancer 1,165 T cell 29.0% 0.55 0.94
NSCLC_38242124__IMC__178_C5,8 Lung Primary cancer 2,625 Tumor/Malignant cell 75.5% 0.98 0.08
NSCLC_38242124__IMC__178_C5,9 Lung Primary cancer 84 Tumor/Malignant cell 69.0% 0.74 0.45
NSCLC_38242124__IMC__178_C6,1 Lung Primary cancer 3,188 B cell 32.6% 0.77 0.46
NSCLC_38242124__IMC__178_C6,10 Lung Primary cancer 3,397 Fibroblast 41.2% 0.86 0.38
NSCLC_38242124__IMC__178_C6,13 Lung Primary cancer 2,797 Tumor/Malignant cell 65.8% 0.97 0.12
NSCLC_38242124__IMC__178_C6,15 Lung Primary cancer 2,501 Tumor/Malignant cell 31.7% 0.86 0.40
NSCLC_38242124__IMC__178_C6,16 Lung Primary cancer 6,911 B cell 87.1% 0.79 0.28
NSCLC_38242124__IMC__178_C6,17 Lung Primary cancer 884 Tumor/Malignant cell 63.1% 1.00 0.01
NSCLC_38242124__IMC__178_C6,2 Lung Primary cancer 3,041 Tumor/Malignant cell 79.2% 0.97 0.09
NSCLC_38242124__IMC__178_C6,4 Lung Primary cancer 3,154 Fibroblast 22.4% 0.49 0.84
NSCLC_38242124__IMC__178_C6,5 Lung Primary cancer 3,116 Tumor/Malignant cell 42.8% 0.87 0.43