scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

Download spatial tables

Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_C6,6 Lung Primary cancer 5,941 Immune 51.1% 0.96 0.11
NSCLC_38242124__IMC__178_C7,1 Lung Primary cancer 2,065 Stromal 47.2% 0.99 0.08
NSCLC_38242124__IMC__178_C7,10 Lung Primary cancer 4,343 Tumor/Malignant 75.6% 0.98 0.06
NSCLC_38242124__IMC__178_C7,11 Lung Primary cancer 3,648 Other 22.0% 0.34 0.99
NSCLC_38242124__IMC__178_C7,12 Lung Primary cancer 2,028 Stromal 29.2% 0.85 0.46
NSCLC_38242124__IMC__178_C7,13 Lung Primary cancer 4,135 Tumor/Malignant 43.7% 0.90 0.31
NSCLC_38242124__IMC__178_C7,15 Lung Primary cancer 434 Stromal 50.5% 0.84 0.39
NSCLC_38242124__IMC__178_C7,16 Lung Primary cancer 6,979 Immune 84.2% 1.00 0.02
NSCLC_38242124__IMC__178_C7,17 Lung Primary cancer 3,366 Tumor/Malignant 77.0% 0.99 0.05
NSCLC_38242124__IMC__178_C7,3 Lung Primary cancer 1,170 Stromal 43.1% 0.55 0.85
NSCLC_38242124__IMC__178_C7,5 Lung Primary cancer 2,906 Tumor/Malignant 39.7% 0.90 0.33
NSCLC_38242124__IMC__178_C7,6 Lung Primary cancer 5,969 Tumor/Malignant 54.0% 0.97 0.12
NSCLC_38242124__IMC__178_C7,7 Lung Primary cancer 4,149 Tumor/Malignant 29.7% 0.99 0.05
NSCLC_38242124__IMC__178_C7,8 Lung Primary cancer 4,592 Tumor/Malignant 53.0% 0.94 0.22
NSCLC_38242124__IMC__178_C7,9 Lung Primary cancer 4,120 Tumor/Malignant 41.7% 0.93 0.29
NSCLC_38242124__IMC__178_C8,1 Lung Primary cancer 3,436 Immune 23.9% 0.83 0.47
NSCLC_38242124__IMC__178_C8,10 Lung Primary cancer 3,751 Tumor/Malignant 62.2% 0.97 0.10
NSCLC_38242124__IMC__178_C8,12 Lung Primary cancer 1,093 Stromal 47.7% 0.86 0.39
NSCLC_38242124__IMC__178_C8,13 Lung Primary cancer 3,461 Tumor/Malignant 42.9% 0.73 0.61
NSCLC_38242124__IMC__178_C8,14 Lung Primary cancer 1,292 Immune 31.0% 0.88 0.33

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_C6,6 Lung Primary cancer 5,941 Lymphoid 43.6% 0.95 0.17
NSCLC_38242124__IMC__178_C7,1 Lung Primary cancer 2,065 Stromal 48.7% 0.98 0.09
NSCLC_38242124__IMC__178_C7,10 Lung Primary cancer 4,343 Tumor/Malignant 64.9% 0.99 0.05
NSCLC_38242124__IMC__178_C7,11 Lung Primary cancer 3,648 Myeloid 24.5% 0.34 1.12
NSCLC_38242124__IMC__178_C7,12 Lung Primary cancer 2,028 Stromal 28.0% 0.84 0.47
NSCLC_38242124__IMC__178_C7,13 Lung Primary cancer 4,135 Tumor/Malignant 34.9% 0.94 0.25
NSCLC_38242124__IMC__178_C7,15 Lung Primary cancer 434 Stromal 49.5% 0.84 0.38
NSCLC_38242124__IMC__178_C7,16 Lung Primary cancer 6,979 Lymphoid 82.1% 0.99 0.03
NSCLC_38242124__IMC__178_C7,17 Lung Primary cancer 3,366 Tumor/Malignant 79.6% 0.99 0.06
NSCLC_38242124__IMC__178_C7,3 Lung Primary cancer 1,170 Other 30.4% 0.34 0.99
NSCLC_38242124__IMC__178_C7,5 Lung Primary cancer 2,906 Tumor/Malignant 41.7% 0.89 0.35
NSCLC_38242124__IMC__178_C7,6 Lung Primary cancer 5,969 Tumor/Malignant 43.5% 0.99 0.04
NSCLC_38242124__IMC__178_C7,7 Lung Primary cancer 4,149 Tumor/Malignant 45.1% 0.95 0.18
NSCLC_38242124__IMC__178_C7,8 Lung Primary cancer 4,592 Tumor/Malignant 44.2% 0.97 0.14
NSCLC_38242124__IMC__178_C7,9 Lung Primary cancer 4,120 Tumor/Malignant 35.7% 0.95 0.24
NSCLC_38242124__IMC__178_C8,1 Lung Primary cancer 3,436 Myeloid 20.8% 0.35 1.09
NSCLC_38242124__IMC__178_C8,10 Lung Primary cancer 3,751 Tumor/Malignant 56.8% 0.99 0.05
NSCLC_38242124__IMC__178_C8,12 Lung Primary cancer 1,093 Stromal 29.7% 0.74 0.56
NSCLC_38242124__IMC__178_C8,13 Lung Primary cancer 3,461 Tumor/Malignant 46.6% 0.94 0.25
NSCLC_38242124__IMC__178_C8,14 Lung Primary cancer 1,292 Myeloid 25.8% 0.86 0.37

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__178_C6,6 Lung Primary cancer 5,941 T cell 33.9% 0.60 0.73
NSCLC_38242124__IMC__178_C7,1 Lung Primary cancer 2,065 Fibroblast 36.7% 0.69 0.56
NSCLC_38242124__IMC__178_C7,10 Lung Primary cancer 4,343 Tumor/Malignant cell 75.8% 0.98 0.06
NSCLC_38242124__IMC__178_C7,11 Lung Primary cancer 3,648 Tumor/Malignant cell 19.1% 0.74 0.74
NSCLC_38242124__IMC__178_C7,12 Lung Primary cancer 2,028 Fibroblast 29.3% 0.66 0.73
NSCLC_38242124__IMC__178_C7,13 Lung Primary cancer 4,135 Tumor/Malignant cell 44.9% 0.89 0.37
NSCLC_38242124__IMC__178_C7,15 Lung Primary cancer 434 Fibroblast 52.3% 0.78 0.50
NSCLC_38242124__IMC__178_C7,16 Lung Primary cancer 6,979 B cell 65.5% 0.87 0.29
NSCLC_38242124__IMC__178_C7,17 Lung Primary cancer 3,366 Tumor/Malignant cell 77.0% 0.99 0.05
NSCLC_38242124__IMC__178_C7,3 Lung Primary cancer 1,170 Fibroblast 35.8% 0.51 0.91
NSCLC_38242124__IMC__178_C7,5 Lung Primary cancer 2,906 Tumor/Malignant cell 43.0% 0.90 0.37
NSCLC_38242124__IMC__178_C7,6 Lung Primary cancer 5,969 Tumor/Malignant cell 63.9% 0.93 0.20
NSCLC_38242124__IMC__178_C7,7 Lung Primary cancer 4,149 Tumor/Malignant cell 49.7% 0.93 0.24
NSCLC_38242124__IMC__178_C7,8 Lung Primary cancer 4,592 Tumor/Malignant cell 53.3% 0.94 0.23
NSCLC_38242124__IMC__178_C7,9 Lung Primary cancer 4,120 Tumor/Malignant cell 40.4% 0.93 0.30
NSCLC_38242124__IMC__178_C8,1 Lung Primary cancer 3,436 T cell 23.0% 0.58 0.84
NSCLC_38242124__IMC__178_C8,10 Lung Primary cancer 3,751 Tumor/Malignant cell 62.4% 0.97 0.11
NSCLC_38242124__IMC__178_C8,12 Lung Primary cancer 1,093 Fibroblast 42.4% 0.78 0.52
NSCLC_38242124__IMC__178_C8,13 Lung Primary cancer 3,461 Tumor/Malignant cell 53.2% 0.91 0.32
NSCLC_38242124__IMC__178_C8,14 Lung Primary cancer 1,292 Myeloid cell, unspecified 29.7% 0.85 0.44