scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_C6,6 Lung Primary cancer 5,941 0.15 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C7,1 Lung Primary cancer 2,065 0.02 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,10 Lung Primary cancer 4,343 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,11 Lung Primary cancer 3,648 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,12 Lung Primary cancer 2,028 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,13 Lung Primary cancer 4,135 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,15 Lung Primary cancer 434 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,16 Lung Primary cancer 6,979 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,17 Lung Primary cancer 3,366 0.02 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C7,3 Lung Primary cancer 1,170 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,5 Lung Primary cancer 2,906 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,6 Lung Primary cancer 5,969 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,7 Lung Primary cancer 4,149 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,8 Lung Primary cancer 4,592 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,9 Lung Primary cancer 4,120 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C8,1 Lung Primary cancer 3,436 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C8,10 Lung Primary cancer 3,751 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C8,12 Lung Primary cancer 1,093 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C8,13 Lung Primary cancer 3,461 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C8,14 Lung Primary cancer 1,292 0.26 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_C6,6 Lung Primary cancer 5,941 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,1 Lung Primary cancer 2,065 0.02 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,10 Lung Primary cancer 4,343 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,11 Lung Primary cancer 3,648 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,12 Lung Primary cancer 2,028 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,13 Lung Primary cancer 4,135 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,15 Lung Primary cancer 434 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,16 Lung Primary cancer 6,979 0.06 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,17 Lung Primary cancer 3,366 0.02 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C7,3 Lung Primary cancer 1,170 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,5 Lung Primary cancer 2,906 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,6 Lung Primary cancer 5,969 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,7 Lung Primary cancer 4,149 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,8 Lung Primary cancer 4,592 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C7,9 Lung Primary cancer 4,120 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C8,1 Lung Primary cancer 3,436 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C8,10 Lung Primary cancer 3,751 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C8,12 Lung Primary cancer 1,093 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C8,13 Lung Primary cancer 3,461 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__178_C8,14 Lung Primary cancer 1,292 0.26 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__178_C6,6 Lung Primary cancer 5,941 0.30 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,1 Lung Primary cancer 2,065 0.04 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C7,10 Lung Primary cancer 4,343 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,11 Lung Primary cancer 3,648 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,12 Lung Primary cancer 2,028 0.17 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,13 Lung Primary cancer 4,135 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,15 Lung Primary cancer 434 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__178_C7,16 Lung Primary cancer 6,979 0.29 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,17 Lung Primary cancer 3,366 0.02 0.03 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C7,3 Lung Primary cancer 1,170 0.15 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C7,5 Lung Primary cancer 2,906 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,6 Lung Primary cancer 5,969 0.30 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,7 Lung Primary cancer 4,149 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,8 Lung Primary cancer 4,592 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C7,9 Lung Primary cancer 4,120 0.27 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C8,1 Lung Primary cancer 3,436 0.18 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C8,10 Lung Primary cancer 3,751 0.35 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C8,12 Lung Primary cancer 1,093 0.09 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__178_C8,13 Lung Primary cancer 3,461 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__178_C8,14 Lung Primary cancer 1,292 0.27 0.14 Weakly structured Weakly segregated