scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A1,9 Lung Primary cancer 4,113 Tumor/Malignant 81.7% 0.96 0.13
NSCLC_38242124__IMC__86_A2,1 Lung Primary cancer 4,130 Immune 65.1% 1.00 0.04
NSCLC_38242124__IMC__86_A2,10 Lung Primary cancer 2,069 Stromal 28.4% 0.39 1.03
NSCLC_38242124__IMC__86_A2,11 Lung Primary cancer 4,785 Tumor/Malignant 33.9% 0.89 0.32
NSCLC_38242124__IMC__86_A2,12 Lung Primary cancer 3,689 Tumor/Malignant 67.0% 0.96 0.16
NSCLC_38242124__IMC__86_A2,13 Lung Primary cancer 3,237 Tumor/Malignant 42.5% 1.00 0.05
NSCLC_38242124__IMC__86_A2,14 Lung Primary cancer 4,439 Tumor/Malignant 77.3% 0.98 0.06
NSCLC_38242124__IMC__86_A2,2 Lung Primary cancer 488 Tumor/Malignant 57.0% 0.95 0.18
NSCLC_38242124__IMC__86_A2,3 Lung Primary cancer 3,769 Tumor/Malignant 44.8% 0.96 0.13
NSCLC_38242124__IMC__86_A2,4 Lung Primary cancer 2,367 Stromal 37.0% 0.60 0.83
NSCLC_38242124__IMC__86_A2,5 Lung Primary cancer 2,045 Stromal 38.6% 0.85 0.39
NSCLC_38242124__IMC__86_A2,6 Lung Primary cancer 2,533 Stromal 35.4% 0.53 0.93
NSCLC_38242124__IMC__86_A2,7 Lung Primary cancer 2,781 Tumor/Malignant 41.0% 0.93 0.26
NSCLC_38242124__IMC__86_A2,8 Lung Primary cancer 3,309 Tumor/Malignant 60.9% 1.00 0.04
NSCLC_38242124__IMC__86_A2,9 Lung Primary cancer 3,159 Stromal 24.6% 0.67 0.69
NSCLC_38242124__IMC__86_A3,10 Lung Primary cancer 4,172 Tumor/Malignant 62.4% 0.97 0.09
NSCLC_38242124__IMC__86_A3,11 Lung Primary cancer 486 Stromal 33.3% 0.60 0.78
NSCLC_38242124__IMC__86_A3,12 Lung Primary cancer 2,560 Tumor/Malignant 48.7% 0.90 0.27
NSCLC_38242124__IMC__86_A3,13 Lung Primary cancer 3,849 Tumor/Malignant 93.8% 0.99 0.03
NSCLC_38242124__IMC__86_A3,14 Lung Primary cancer 1,921 Tumor/Malignant 26.3% 0.99 0.05

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A1,9 Lung Primary cancer 4,113 Tumor/Malignant 66.5% 0.99 0.07
NSCLC_38242124__IMC__86_A2,1 Lung Primary cancer 4,130 Myeloid 64.7% 1.00 0.04
NSCLC_38242124__IMC__86_A2,10 Lung Primary cancer 2,069 Tumor/Malignant 28.1% 0.40 0.97
NSCLC_38242124__IMC__86_A2,11 Lung Primary cancer 4,785 Tumor/Malignant 33.9% 0.88 0.32
NSCLC_38242124__IMC__86_A2,12 Lung Primary cancer 3,689 Tumor/Malignant 52.8% 0.99 0.05
NSCLC_38242124__IMC__86_A2,13 Lung Primary cancer 3,237 Tumor/Malignant 50.5% 0.97 0.11
NSCLC_38242124__IMC__86_A2,14 Lung Primary cancer 4,439 Tumor/Malignant 66.8% 0.99 0.03
NSCLC_38242124__IMC__86_A2,2 Lung Primary cancer 488 Tumor/Malignant 54.1% 0.95 0.15
NSCLC_38242124__IMC__86_A2,3 Lung Primary cancer 3,769 Tumor/Malignant 45.3% 0.95 0.14
NSCLC_38242124__IMC__86_A2,4 Lung Primary cancer 2,367 Stromal 28.9% 0.30 1.15
NSCLC_38242124__IMC__86_A2,5 Lung Primary cancer 2,045 Stromal 27.9% 0.91 0.29
NSCLC_38242124__IMC__86_A2,6 Lung Primary cancer 2,533 Stromal 23.5% 0.43 1.05
NSCLC_38242124__IMC__86_A2,7 Lung Primary cancer 2,781 Tumor/Malignant 25.5% 0.97 0.13
NSCLC_38242124__IMC__86_A2,8 Lung Primary cancer 3,309 Tumor/Malignant 61.7% 1.00 0.04
NSCLC_38242124__IMC__86_A2,9 Lung Primary cancer 3,159 Stromal 22.6% 0.29 1.07
NSCLC_38242124__IMC__86_A3,10 Lung Primary cancer 4,172 Tumor/Malignant 50.0% 0.97 0.09
NSCLC_38242124__IMC__86_A3,11 Lung Primary cancer 486 Stromal 35.6% 0.57 0.82
NSCLC_38242124__IMC__86_A3,12 Lung Primary cancer 2,560 Tumor/Malignant 35.9% 0.97 0.14
NSCLC_38242124__IMC__86_A3,13 Lung Primary cancer 3,849 Tumor/Malignant 93.7% 0.99 0.03
NSCLC_38242124__IMC__86_A3,14 Lung Primary cancer 1,921 Tumor/Malignant 26.1% 0.99 0.04

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A1,9 Lung Primary cancer 4,113 Tumor/Malignant cell 67.3% 0.99 0.07
NSCLC_38242124__IMC__86_A2,1 Lung Primary cancer 4,130 Myeloid cell, unspecified 47.8% 0.99 0.05
NSCLC_38242124__IMC__86_A2,10 Lung Primary cancer 2,069 Fibroblast 33.6% 0.63 0.81
NSCLC_38242124__IMC__86_A2,11 Lung Primary cancer 4,785 Tumor/Malignant cell 35.3% 0.88 0.35
NSCLC_38242124__IMC__86_A2,12 Lung Primary cancer 3,689 Tumor/Malignant cell 65.7% 0.97 0.14
NSCLC_38242124__IMC__86_A2,13 Lung Primary cancer 3,237 Tumor/Malignant cell 65.4% 0.94 0.21
NSCLC_38242124__IMC__86_A2,14 Lung Primary cancer 4,439 Tumor/Malignant cell 79.4% 0.98 0.08
NSCLC_38242124__IMC__86_A2,2 Lung Primary cancer 488 Tumor/Malignant cell 55.5% 0.94 0.17
NSCLC_38242124__IMC__86_A2,3 Lung Primary cancer 3,769 Tumor/Malignant cell 44.8% 0.96 0.14
NSCLC_38242124__IMC__86_A2,4 Lung Primary cancer 2,367 Fibroblast 28.3% 0.27 1.25
NSCLC_38242124__IMC__86_A2,5 Lung Primary cancer 2,045 Fibroblast 35.4% 0.85 0.42
NSCLC_38242124__IMC__86_A2,6 Lung Primary cancer 2,533 Fibroblast 27.0% 0.73 0.69
NSCLC_38242124__IMC__86_A2,7 Lung Primary cancer 2,781 Tumor/Malignant cell 41.7% 0.94 0.28
NSCLC_38242124__IMC__86_A2,8 Lung Primary cancer 3,309 Tumor/Malignant cell 78.1% 0.96 0.13
NSCLC_38242124__IMC__86_A2,9 Lung Primary cancer 3,159 Granulocyte 21.9% 0.35 1.14
NSCLC_38242124__IMC__86_A3,10 Lung Primary cancer 4,172 Tumor/Malignant cell 63.5% 0.97 0.10
NSCLC_38242124__IMC__86_A3,11 Lung Primary cancer 486 Fibroblast 32.3% 0.57 0.80
NSCLC_38242124__IMC__86_A3,12 Lung Primary cancer 2,560 Tumor/Malignant cell 48.0% 0.91 0.27
NSCLC_38242124__IMC__86_A3,13 Lung Primary cancer 3,849 Tumor/Malignant cell 93.1% 0.99 0.02
NSCLC_38242124__IMC__86_A3,14 Lung Primary cancer 1,921 Tumor/Malignant cell 41.4% 0.94 0.21