scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A1,9 Lung Primary cancer 4,113 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,1 Lung Primary cancer 4,130 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,10 Lung Primary cancer 2,069 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,11 Lung Primary cancer 4,785 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,12 Lung Primary cancer 3,689 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,13 Lung Primary cancer 3,237 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,14 Lung Primary cancer 4,439 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,2 Lung Primary cancer 488 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,3 Lung Primary cancer 3,769 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A2,4 Lung Primary cancer 2,367 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,5 Lung Primary cancer 2,045 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,6 Lung Primary cancer 2,533 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,7 Lung Primary cancer 2,781 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,8 Lung Primary cancer 3,309 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,9 Lung Primary cancer 3,159 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,10 Lung Primary cancer 4,172 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A3,11 Lung Primary cancer 486 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A3,12 Lung Primary cancer 2,560 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,13 Lung Primary cancer 3,849 0.03 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A3,14 Lung Primary cancer 1,921 0.29 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A1,9 Lung Primary cancer 4,113 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,1 Lung Primary cancer 4,130 0.07 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,10 Lung Primary cancer 2,069 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,11 Lung Primary cancer 4,785 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,12 Lung Primary cancer 3,689 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,13 Lung Primary cancer 3,237 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,14 Lung Primary cancer 4,439 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,2 Lung Primary cancer 488 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,3 Lung Primary cancer 3,769 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A2,4 Lung Primary cancer 2,367 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,5 Lung Primary cancer 2,045 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,6 Lung Primary cancer 2,533 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,7 Lung Primary cancer 2,781 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A2,8 Lung Primary cancer 3,309 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A2,9 Lung Primary cancer 3,159 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,10 Lung Primary cancer 4,172 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A3,11 Lung Primary cancer 486 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A3,12 Lung Primary cancer 2,560 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,13 Lung Primary cancer 3,849 0.03 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A3,14 Lung Primary cancer 1,921 0.29 0.12 Weakly structured Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A1,9 Lung Primary cancer 4,113 0.05 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A2,1 Lung Primary cancer 4,130 0.08 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A2,10 Lung Primary cancer 2,069 0.16 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A2,11 Lung Primary cancer 4,785 0.34 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A2,12 Lung Primary cancer 3,689 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A2,13 Lung Primary cancer 3,237 0.25 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A2,14 Lung Primary cancer 4,439 0.15 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A2,2 Lung Primary cancer 488 0.28 0.04 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A2,3 Lung Primary cancer 3,769 0.42 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A2,4 Lung Primary cancer 2,367 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A2,5 Lung Primary cancer 2,045 0.30 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A2,6 Lung Primary cancer 2,533 0.12 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A2,7 Lung Primary cancer 2,781 0.24 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A2,8 Lung Primary cancer 3,309 0.14 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A2,9 Lung Primary cancer 3,159 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A3,10 Lung Primary cancer 4,172 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A3,11 Lung Primary cancer 486 0.09 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A3,12 Lung Primary cancer 2,560 0.33 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A3,13 Lung Primary cancer 3,849 0.03 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A3,14 Lung Primary cancer 1,921 0.29 0.12 Weakly structured Weakly segregated