scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A3,2 Lung Primary cancer 964 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,3 Lung Primary cancer 1,991 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,5 Lung Primary cancer 2,886 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A3,6 Lung Primary cancer 1,225 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,8 Lung Primary cancer 1,950 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,9 Lung Primary cancer 1,438 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A4,10 Lung Primary cancer 3,091 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A4,11 Lung Primary cancer 4,264 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,12 Lung Primary cancer 1,518 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,13 Lung Primary cancer 3,702 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A4,14 Lung Primary cancer 1,475 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,2 Lung Primary cancer 3,098 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,4 Lung Primary cancer 2,095 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A4,5 Lung Primary cancer 2,889 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A4,7 Lung Primary cancer 4,264 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,8 Lung Primary cancer 2,515 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,9 Lung Primary cancer 3,185 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,10 Lung Primary cancer 2,294 0.44 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A5,11 Lung Primary cancer 3,978 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,12 Lung Primary cancer 2,767 0.26 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A3,2 Lung Primary cancer 964 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,3 Lung Primary cancer 1,991 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,5 Lung Primary cancer 2,886 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A3,6 Lung Primary cancer 1,225 0.18 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A3,8 Lung Primary cancer 1,950 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,9 Lung Primary cancer 1,438 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A4,10 Lung Primary cancer 3,091 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A4,11 Lung Primary cancer 4,264 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,12 Lung Primary cancer 1,518 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,13 Lung Primary cancer 3,702 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A4,14 Lung Primary cancer 1,475 0.35 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A4,2 Lung Primary cancer 3,098 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,4 Lung Primary cancer 2,095 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A4,5 Lung Primary cancer 2,889 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A4,7 Lung Primary cancer 4,264 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,8 Lung Primary cancer 2,515 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A4,9 Lung Primary cancer 3,185 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,10 Lung Primary cancer 2,294 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A5,11 Lung Primary cancer 3,978 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,12 Lung Primary cancer 2,767 0.27 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A3,2 Lung Primary cancer 964 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A3,3 Lung Primary cancer 1,991 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A3,5 Lung Primary cancer 2,886 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A3,6 Lung Primary cancer 1,225 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A3,8 Lung Primary cancer 1,950 0.23 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A3,9 Lung Primary cancer 1,438 0.12 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A4,10 Lung Primary cancer 3,091 0.15 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A4,11 Lung Primary cancer 4,264 0.28 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A4,12 Lung Primary cancer 1,518 0.16 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A4,13 Lung Primary cancer 3,702 0.37 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A4,14 Lung Primary cancer 1,475 0.35 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A4,2 Lung Primary cancer 3,098 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A4,4 Lung Primary cancer 2,095 0.39 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A4,5 Lung Primary cancer 2,889 0.39 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A4,7 Lung Primary cancer 4,264 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A4,8 Lung Primary cancer 2,515 0.33 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A4,9 Lung Primary cancer 3,185 0.31 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A5,10 Lung Primary cancer 2,294 0.44 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A5,11 Lung Primary cancer 3,978 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A5,12 Lung Primary cancer 2,767 0.27 0.15 Weakly structured Weakly segregated