scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A5,14 Lung Primary cancer 1,882 Stromal 25.1% 0.78 0.55
NSCLC_38242124__IMC__86_A5,3 Lung Primary cancer 424 Immune 49.5% 0.87 0.31
NSCLC_38242124__IMC__86_A5,4 Lung Primary cancer 3,268 Tumor/Malignant 50.6% 0.98 0.09
NSCLC_38242124__IMC__86_A5,5 Lung Primary cancer 3,568 Tumor/Malignant 38.1% 0.93 0.19
NSCLC_38242124__IMC__86_A5,6 Lung Primary cancer 4,220 Immune 31.0% 0.91 0.24
NSCLC_38242124__IMC__86_A5,7 Lung Primary cancer 2,727 Tumor/Malignant 56.6% 0.97 0.09
NSCLC_38242124__IMC__86_A5,8 Lung Primary cancer 3,225 Tumor/Malignant 33.5% 0.97 0.10
NSCLC_38242124__IMC__86_A5,9 Lung Primary cancer 1,899 Tumor/Malignant 50.8% 0.93 0.22
NSCLC_38242124__IMC__86_A6,1 Lung Primary cancer 3,030 Tumor/Malignant 40.4% 0.99 0.04
NSCLC_38242124__IMC__86_A6,10 Lung Primary cancer 348 Tumor/Malignant 68.1% 0.97 0.06
NSCLC_38242124__IMC__86_A6,11 Lung Primary cancer 859 Stromal 27.0% 0.54 0.79
NSCLC_38242124__IMC__86_A6,12 Lung Primary cancer 2,618 Tumor/Malignant 27.2% 0.92 0.29
NSCLC_38242124__IMC__86_A6,13 Lung Primary cancer 1,610 Tumor/Malignant 42.8% 0.96 0.19
NSCLC_38242124__IMC__86_A6,14 Lung Primary cancer 2,761 Tumor/Malignant 54.4% 0.90 0.30
NSCLC_38242124__IMC__86_A6,3 Lung Primary cancer 1,879 Stromal 26.3% 0.68 0.75
NSCLC_38242124__IMC__86_A6,4 Lung Primary cancer 3,001 Tumor/Malignant 57.0% 0.95 0.20
NSCLC_38242124__IMC__86_A6,5 Lung Primary cancer 4,206 Immune 28.8% 0.89 0.34
NSCLC_38242124__IMC__86_A6,6 Lung Primary cancer 352 Tumor/Malignant 65.6% 0.91 0.23
NSCLC_38242124__IMC__86_A6,7 Lung Primary cancer 2,666 Immune 32.0% 0.32 0.96
NSCLC_38242124__IMC__86_A6,8 Lung Primary cancer 2,608 Tumor/Malignant 74.8% 0.99 0.05

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A5,14 Lung Primary cancer 1,882 Stromal 23.2% 0.80 0.56
NSCLC_38242124__IMC__86_A5,3 Lung Primary cancer 424 Myeloid 46.9% 0.78 0.51
NSCLC_38242124__IMC__86_A5,4 Lung Primary cancer 3,268 Tumor/Malignant 48.4% 0.99 0.07
NSCLC_38242124__IMC__86_A5,5 Lung Primary cancer 3,568 Tumor/Malignant 34.7% 0.94 0.17
NSCLC_38242124__IMC__86_A5,6 Lung Primary cancer 4,220 Myeloid 46.0% 0.82 0.38
NSCLC_38242124__IMC__86_A5,7 Lung Primary cancer 2,727 Tumor/Malignant 54.4% 0.98 0.07
NSCLC_38242124__IMC__86_A5,8 Lung Primary cancer 3,225 Tumor/Malignant 33.2% 0.97 0.09
NSCLC_38242124__IMC__86_A5,9 Lung Primary cancer 1,899 Tumor/Malignant 33.0% 0.74 0.60
NSCLC_38242124__IMC__86_A6,1 Lung Primary cancer 3,030 Tumor/Malignant 40.4% 0.99 0.04
NSCLC_38242124__IMC__86_A6,10 Lung Primary cancer 348 Tumor/Malignant 68.1% 0.97 0.06
NSCLC_38242124__IMC__86_A6,11 Lung Primary cancer 859 Stromal 29.3% 0.86 0.39
NSCLC_38242124__IMC__86_A6,12 Lung Primary cancer 2,618 Tumor/Malignant 25.3% 0.93 0.27
NSCLC_38242124__IMC__86_A6,13 Lung Primary cancer 1,610 Tumor/Malignant 42.2% 0.96 0.18
NSCLC_38242124__IMC__86_A6,14 Lung Primary cancer 2,761 Tumor/Malignant 31.3% 0.75 0.56
NSCLC_38242124__IMC__86_A6,3 Lung Primary cancer 1,879 Stromal 25.7% 0.36 1.09
NSCLC_38242124__IMC__86_A6,4 Lung Primary cancer 3,001 Tumor/Malignant 38.1% 1.00 0.05
NSCLC_38242124__IMC__86_A6,5 Lung Primary cancer 4,206 Tumor/Malignant 26.0% 0.90 0.29
NSCLC_38242124__IMC__86_A6,6 Lung Primary cancer 352 Tumor/Malignant 64.8% 0.92 0.23
NSCLC_38242124__IMC__86_A6,7 Lung Primary cancer 2,666 Stromal 26.7% 0.33 1.08
NSCLC_38242124__IMC__86_A6,8 Lung Primary cancer 2,608 Tumor/Malignant 75.4% 0.99 0.05

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A5,14 Lung Primary cancer 1,882 Fibroblast 28.0% 0.71 0.70
NSCLC_38242124__IMC__86_A5,3 Lung Primary cancer 424 Myeloid cell, unspecified 47.2% 0.77 0.54
NSCLC_38242124__IMC__86_A5,4 Lung Primary cancer 3,268 Tumor/Malignant cell 54.4% 0.97 0.13
NSCLC_38242124__IMC__86_A5,5 Lung Primary cancer 3,568 Tumor/Malignant cell 35.1% 0.94 0.17
NSCLC_38242124__IMC__86_A5,6 Lung Primary cancer 4,220 Tumor/Malignant cell 31.2% 0.93 0.25
NSCLC_38242124__IMC__86_A5,7 Lung Primary cancer 2,727 Tumor/Malignant cell 56.4% 0.98 0.09
NSCLC_38242124__IMC__86_A5,8 Lung Primary cancer 3,225 Tumor/Malignant cell 33.7% 0.97 0.10
NSCLC_38242124__IMC__86_A5,9 Lung Primary cancer 1,899 Tumor/Malignant cell 50.3% 0.93 0.22
NSCLC_38242124__IMC__86_A6,1 Lung Primary cancer 3,030 Tumor/Malignant cell 55.8% 0.96 0.17
NSCLC_38242124__IMC__86_A6,10 Lung Primary cancer 348 Tumor/Malignant cell 68.1% 0.97 0.06
NSCLC_38242124__IMC__86_A6,11 Lung Primary cancer 859 Fibroblast 29.9% 0.76 0.57
NSCLC_38242124__IMC__86_A6,12 Lung Primary cancer 2,618 Tumor/Malignant cell 34.3% 0.89 0.37
NSCLC_38242124__IMC__86_A6,13 Lung Primary cancer 1,610 Tumor/Malignant cell 42.7% 0.95 0.19
NSCLC_38242124__IMC__86_A6,14 Lung Primary cancer 2,761 Tumor/Malignant cell 54.7% 0.91 0.30
NSCLC_38242124__IMC__86_A6,3 Lung Primary cancer 1,879 Other 24.3% 0.43 1.06
NSCLC_38242124__IMC__86_A6,4 Lung Primary cancer 3,001 Tumor/Malignant cell 59.7% 0.94 0.22
NSCLC_38242124__IMC__86_A6,5 Lung Primary cancer 4,206 B cell 29.1% 0.60 0.76
NSCLC_38242124__IMC__86_A6,6 Lung Primary cancer 352 Tumor/Malignant cell 67.9% 0.91 0.22
NSCLC_38242124__IMC__86_A6,7 Lung Primary cancer 2,666 Fibroblast 28.5% 0.27 1.20
NSCLC_38242124__IMC__86_A6,8 Lung Primary cancer 2,608 Tumor/Malignant cell 81.3% 0.98 0.08