scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A5,14 Lung Primary cancer 1,882 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,3 Lung Primary cancer 424 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,4 Lung Primary cancer 3,268 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,5 Lung Primary cancer 3,568 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A5,6 Lung Primary cancer 4,220 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,7 Lung Primary cancer 2,727 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A5,8 Lung Primary cancer 3,225 0.46 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A5,9 Lung Primary cancer 1,899 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,1 Lung Primary cancer 3,030 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A6,10 Lung Primary cancer 348 0.31 0.26 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,11 Lung Primary cancer 859 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,12 Lung Primary cancer 2,618 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,13 Lung Primary cancer 1,610 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A6,14 Lung Primary cancer 2,761 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,3 Lung Primary cancer 1,879 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A6,4 Lung Primary cancer 3,001 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,5 Lung Primary cancer 4,206 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,6 Lung Primary cancer 352 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,7 Lung Primary cancer 2,666 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,8 Lung Primary cancer 2,608 0.04 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A5,14 Lung Primary cancer 1,882 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,3 Lung Primary cancer 424 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,4 Lung Primary cancer 3,268 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,5 Lung Primary cancer 3,568 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A5,6 Lung Primary cancer 4,220 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A5,7 Lung Primary cancer 2,727 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A5,8 Lung Primary cancer 3,225 0.46 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A5,9 Lung Primary cancer 1,899 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,1 Lung Primary cancer 3,030 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A6,10 Lung Primary cancer 348 0.31 0.18 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,11 Lung Primary cancer 859 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,12 Lung Primary cancer 2,618 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,13 Lung Primary cancer 1,610 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A6,14 Lung Primary cancer 2,761 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,3 Lung Primary cancer 1,879 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,4 Lung Primary cancer 3,001 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,5 Lung Primary cancer 4,206 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,6 Lung Primary cancer 352 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,7 Lung Primary cancer 2,666 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,8 Lung Primary cancer 2,608 0.04 0.17 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A5,14 Lung Primary cancer 1,882 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A5,3 Lung Primary cancer 424 0.25 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A5,4 Lung Primary cancer 3,268 0.35 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A5,5 Lung Primary cancer 3,568 0.38 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A5,6 Lung Primary cancer 4,220 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A5,7 Lung Primary cancer 2,727 0.37 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A5,8 Lung Primary cancer 3,225 0.46 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A5,9 Lung Primary cancer 1,899 0.28 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,1 Lung Primary cancer 3,030 0.35 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A6,10 Lung Primary cancer 348 0.31 0.15 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A6,11 Lung Primary cancer 859 0.22 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,12 Lung Primary cancer 2,618 0.28 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,13 Lung Primary cancer 1,610 0.39 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A6,14 Lung Primary cancer 2,761 0.26 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,3 Lung Primary cancer 1,879 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,4 Lung Primary cancer 3,001 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,5 Lung Primary cancer 4,206 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,6 Lung Primary cancer 352 0.16 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,7 Lung Primary cancer 2,666 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A6,8 Lung Primary cancer 2,608 0.04 0.11 Homogeneous Weakly segregated