scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A6,9 Lung Primary cancer 1,491 Tumor/Malignant 43.7% 0.93 0.21
NSCLC_38242124__IMC__86_A7,1 Lung Primary cancer 2,317 Tumor/Malignant 58.9% 0.97 0.08
NSCLC_38242124__IMC__86_A7,10 Lung Primary cancer 2,375 Tumor/Malignant 30.7% 0.96 0.19
NSCLC_38242124__IMC__86_A7,11 Lung Primary cancer 2,116 Stromal 45.1% 0.87 0.35
NSCLC_38242124__IMC__86_A7,12 Lung Primary cancer 540 Other 64.1% 0.98 0.07
NSCLC_38242124__IMC__86_A7,13 Lung Primary cancer 4,267 Tumor/Malignant 26.8% 0.93 0.23
NSCLC_38242124__IMC__86_A7,2 Lung Primary cancer 2,945 Tumor/Malignant 48.8% 0.88 0.36
NSCLC_38242124__IMC__86_A7,4 Lung Primary cancer 4,008 Tumor/Malignant 28.8% 0.54 0.85
NSCLC_38242124__IMC__86_A7,5 Lung Primary cancer 3,313 Tumor/Malignant 80.1% 0.99 0.04
NSCLC_38242124__IMC__86_A7,7 Lung Primary cancer 1,967 Tumor/Malignant 52.6% 0.91 0.28
NSCLC_38242124__IMC__86_A7,8 Lung Primary cancer 2,968 Stromal 49.4% 0.96 0.14
NSCLC_38242124__IMC__86_A7,9 Lung Primary cancer 2,881 Other 31.9% 0.40 0.98
NSCLC_38242124__IMC__86_A8,1 Lung Primary cancer 2,834 Tumor/Malignant 31.0% 0.77 0.62
NSCLC_38242124__IMC__86_A8,10 Lung Primary cancer 3,285 Immune 35.6% 0.50 0.88
NSCLC_38242124__IMC__86_A8,11 Lung Primary cancer 2,883 Stromal 31.2% 0.56 0.80
NSCLC_38242124__IMC__86_A8,12 Lung Primary cancer 3,110 Tumor/Malignant 61.4% 0.98 0.07
NSCLC_38242124__IMC__86_A8,14 Lung Primary cancer 2,257 Tumor/Malignant 38.7% 0.89 0.35
NSCLC_38242124__IMC__86_A8,2 Lung Primary cancer 868 Tumor/Malignant 47.0% 0.93 0.24
NSCLC_38242124__IMC__86_A8,3 Lung Primary cancer 3,118 Tumor/Malignant 50.5% 0.98 0.09
NSCLC_38242124__IMC__86_A8,4 Lung Primary cancer 3,640 Tumor/Malignant 29.1% 0.93 0.24

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A6,9 Lung Primary cancer 1,491 Tumor/Malignant 42.5% 0.94 0.21
NSCLC_38242124__IMC__86_A7,1 Lung Primary cancer 2,317 Tumor/Malignant 58.9% 0.97 0.08
NSCLC_38242124__IMC__86_A7,10 Lung Primary cancer 2,375 Tumor/Malignant 31.2% 0.96 0.19
NSCLC_38242124__IMC__86_A7,11 Lung Primary cancer 2,116 Stromal 43.2% 0.88 0.34
NSCLC_38242124__IMC__86_A7,12 Lung Primary cancer 540 Other 64.1% 0.98 0.07
NSCLC_38242124__IMC__86_A7,13 Lung Primary cancer 4,267 Tumor/Malignant 26.4% 0.93 0.22
NSCLC_38242124__IMC__86_A7,2 Lung Primary cancer 2,945 Tumor/Malignant 42.9% 0.90 0.32
NSCLC_38242124__IMC__86_A7,4 Lung Primary cancer 4,008 Tumor/Malignant 24.2% 0.59 0.91
NSCLC_38242124__IMC__86_A7,5 Lung Primary cancer 3,313 Tumor/Malignant 82.9% 0.99 0.05
NSCLC_38242124__IMC__86_A7,7 Lung Primary cancer 1,967 Tumor/Malignant 48.9% 0.73 0.59
NSCLC_38242124__IMC__86_A7,8 Lung Primary cancer 2,968 Stromal 49.4% 0.96 0.14
NSCLC_38242124__IMC__86_A7,9 Lung Primary cancer 2,881 Tumor/Malignant 25.0% 0.47 1.03
NSCLC_38242124__IMC__86_A8,1 Lung Primary cancer 2,834 Tumor/Malignant 28.3% 0.79 0.61
NSCLC_38242124__IMC__86_A8,10 Lung Primary cancer 3,285 Stromal 29.9% 0.37 1.10
NSCLC_38242124__IMC__86_A8,11 Lung Primary cancer 2,883 Stromal 27.5% 0.88 0.38
NSCLC_38242124__IMC__86_A8,12 Lung Primary cancer 3,110 Tumor/Malignant 54.6% 0.99 0.05
NSCLC_38242124__IMC__86_A8,14 Lung Primary cancer 2,257 Tumor/Malignant 30.4% 0.94 0.22
NSCLC_38242124__IMC__86_A8,2 Lung Primary cancer 868 Tumor/Malignant 40.0% 0.73 0.56
NSCLC_38242124__IMC__86_A8,3 Lung Primary cancer 3,118 Tumor/Malignant 59.0% 0.99 0.05
NSCLC_38242124__IMC__86_A8,4 Lung Primary cancer 3,640 Tumor/Malignant 30.2% 0.93 0.26

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A6,9 Lung Primary cancer 1,491 Tumor/Malignant cell 43.7% 0.93 0.22
NSCLC_38242124__IMC__86_A7,1 Lung Primary cancer 2,317 Tumor/Malignant cell 59.0% 0.97 0.08
NSCLC_38242124__IMC__86_A7,10 Lung Primary cancer 2,375 Tumor/Malignant cell 34.2% 0.94 0.25
NSCLC_38242124__IMC__86_A7,11 Lung Primary cancer 2,116 Fibroblast 42.5% 0.87 0.35
NSCLC_38242124__IMC__86_A7,12 Lung Primary cancer 540 Other 68.5% 0.97 0.09
NSCLC_38242124__IMC__86_A7,13 Lung Primary cancer 4,267 Tumor/Malignant cell 28.1% 0.91 0.27
NSCLC_38242124__IMC__86_A7,2 Lung Primary cancer 2,945 Tumor/Malignant cell 45.3% 0.90 0.34
NSCLC_38242124__IMC__86_A7,4 Lung Primary cancer 4,008 Tumor/Malignant cell 31.1% 0.84 0.55
NSCLC_38242124__IMC__86_A7,5 Lung Primary cancer 3,313 Tumor/Malignant cell 86.9% 0.98 0.07
NSCLC_38242124__IMC__86_A7,7 Lung Primary cancer 1,967 Tumor/Malignant cell 53.4% 0.90 0.29
NSCLC_38242124__IMC__86_A7,8 Lung Primary cancer 2,968 Fibroblast 42.6% 0.96 0.15
NSCLC_38242124__IMC__86_A7,9 Lung Primary cancer 2,881 Tumor/Malignant cell 25.3% 0.90 0.30
NSCLC_38242124__IMC__86_A8,1 Lung Primary cancer 2,834 Tumor/Malignant cell 36.1% 0.74 0.69
NSCLC_38242124__IMC__86_A8,10 Lung Primary cancer 3,285 Fibroblast 24.4% 0.62 0.89
NSCLC_38242124__IMC__86_A8,11 Lung Primary cancer 2,883 Fibroblast 39.0% 0.77 0.57
NSCLC_38242124__IMC__86_A8,12 Lung Primary cancer 3,110 Tumor/Malignant cell 61.5% 0.98 0.07
NSCLC_38242124__IMC__86_A8,14 Lung Primary cancer 2,257 Tumor/Malignant cell 40.0% 0.88 0.37
NSCLC_38242124__IMC__86_A8,2 Lung Primary cancer 868 Tumor/Malignant cell 43.7% 0.94 0.22
NSCLC_38242124__IMC__86_A8,3 Lung Primary cancer 3,118 Tumor/Malignant cell 64.4% 0.98 0.09
NSCLC_38242124__IMC__86_A8,4 Lung Primary cancer 3,640 Tumor/Malignant cell 36.7% 0.89 0.36