scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A6,9 Lung Primary cancer 1,491 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,1 Lung Primary cancer 2,317 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A7,10 Lung Primary cancer 2,375 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,11 Lung Primary cancer 2,116 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,12 Lung Primary cancer 540 0.02 0.25 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,13 Lung Primary cancer 4,267 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,2 Lung Primary cancer 2,945 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,4 Lung Primary cancer 4,008 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,5 Lung Primary cancer 3,313 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,7 Lung Primary cancer 1,967 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,8 Lung Primary cancer 2,968 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A7,9 Lung Primary cancer 2,881 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,1 Lung Primary cancer 2,834 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,10 Lung Primary cancer 3,285 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,11 Lung Primary cancer 2,883 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,12 Lung Primary cancer 3,110 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A8,14 Lung Primary cancer 2,257 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,2 Lung Primary cancer 868 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,3 Lung Primary cancer 3,118 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,4 Lung Primary cancer 3,640 0.29 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A6,9 Lung Primary cancer 1,491 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,1 Lung Primary cancer 2,317 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A7,10 Lung Primary cancer 2,375 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,11 Lung Primary cancer 2,116 0.09 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,12 Lung Primary cancer 540 0.02 0.25 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,13 Lung Primary cancer 4,267 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,2 Lung Primary cancer 2,945 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,4 Lung Primary cancer 4,008 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,5 Lung Primary cancer 3,313 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,7 Lung Primary cancer 1,967 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A7,8 Lung Primary cancer 2,968 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A7,9 Lung Primary cancer 2,881 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,1 Lung Primary cancer 2,834 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,10 Lung Primary cancer 3,285 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,11 Lung Primary cancer 2,883 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,12 Lung Primary cancer 3,110 0.39 0.19 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A8,14 Lung Primary cancer 2,257 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,2 Lung Primary cancer 868 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A8,3 Lung Primary cancer 3,118 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_A8,4 Lung Primary cancer 3,640 0.29 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A6,9 Lung Primary cancer 1,491 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A7,1 Lung Primary cancer 2,317 0.40 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A7,10 Lung Primary cancer 2,375 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A7,11 Lung Primary cancer 2,116 0.09 0.15 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,12 Lung Primary cancer 540 0.02 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A7,13 Lung Primary cancer 4,267 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A7,2 Lung Primary cancer 2,945 0.14 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A7,4 Lung Primary cancer 4,008 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A7,5 Lung Primary cancer 3,313 0.09 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A7,7 Lung Primary cancer 1,967 0.18 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A7,8 Lung Primary cancer 2,968 0.37 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A7,9 Lung Primary cancer 2,881 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A8,1 Lung Primary cancer 2,834 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A8,10 Lung Primary cancer 3,285 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A8,11 Lung Primary cancer 2,883 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A8,12 Lung Primary cancer 3,110 0.39 0.18 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A8,14 Lung Primary cancer 2,257 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A8,2 Lung Primary cancer 868 0.21 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A8,3 Lung Primary cancer 3,118 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_A8,4 Lung Primary cancer 3,640 0.29 0.11 Weakly structured Weakly segregated