scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

Download spatial tables

Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A8,5 Lung Primary cancer 328 Tumor/Malignant 84.1% 0.98 0.08
NSCLC_38242124__IMC__86_A8,6 Lung Primary cancer 2,615 Tumor/Malignant 83.2% 0.99 0.04
NSCLC_38242124__IMC__86_A8,7 Lung Primary cancer 1,379 Stromal 47.2% 0.86 0.40
NSCLC_38242124__IMC__86_A8,8 Lung Primary cancer 3,459 Tumor/Malignant 55.6% 0.97 0.12
NSCLC_38242124__IMC__86_A8,9 Lung Primary cancer 3,218 Stromal 31.0% 0.72 0.64
NSCLC_38242124__IMC__86_B1,1 Lung Primary cancer 395 Other 45.1% 0.37 0.91
NSCLC_38242124__IMC__86_B1,10 Lung Primary cancer 369 Tumor/Malignant 43.6% 0.88 0.34
NSCLC_38242124__IMC__86_B1,11 Lung Primary cancer 2,966 Tumor/Malignant 38.5% 0.77 0.55
NSCLC_38242124__IMC__86_B1,12 Lung Primary cancer 2,541 Tumor/Malignant 59.0% 0.99 0.04
NSCLC_38242124__IMC__86_B1,13 Lung Primary cancer 686 Tumor/Malignant 63.0% 0.95 0.17
NSCLC_38242124__IMC__86_B1,14 Lung Primary cancer 1,671 Immune 27.5% 0.93 0.21
NSCLC_38242124__IMC__86_B1,2 Lung Primary cancer 700 Stromal 28.4% 0.35 0.96
NSCLC_38242124__IMC__86_B1,3 Lung Primary cancer 4,357 Tumor/Malignant 85.2% 0.99 0.06
NSCLC_38242124__IMC__86_B1,4 Lung Primary cancer 2,910 Tumor/Malignant 34.0% 0.94 0.24
NSCLC_38242124__IMC__86_B1,5 Lung Primary cancer 2,072 Tumor/Malignant 77.8% 0.98 0.07
NSCLC_38242124__IMC__86_B1,6 Lung Primary cancer 2,453 Tumor/Malignant 81.3% 0.99 0.04
NSCLC_38242124__IMC__86_B1,7 Lung Primary cancer 2,948 Tumor/Malignant 81.0% 0.98 0.08
NSCLC_38242124__IMC__86_B1,8 Lung Primary cancer 2,225 Stromal 32.4% 0.93 0.23
NSCLC_38242124__IMC__86_B1,9 Lung Primary cancer 2,548 Tumor/Malignant 33.7% 0.94 0.23
NSCLC_38242124__IMC__86_B2,1 Lung Primary cancer 2,150 Tumor/Malignant 32.1% 0.88 0.34

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A8,5 Lung Primary cancer 328 Tumor/Malignant 84.1% 0.98 0.08
NSCLC_38242124__IMC__86_A8,6 Lung Primary cancer 2,615 Tumor/Malignant 56.2% 1.00 0.02
NSCLC_38242124__IMC__86_A8,7 Lung Primary cancer 1,379 Stromal 42.4% 0.87 0.37
NSCLC_38242124__IMC__86_A8,8 Lung Primary cancer 3,459 Tumor/Malignant 53.7% 0.97 0.12
NSCLC_38242124__IMC__86_A8,9 Lung Primary cancer 3,218 Tumor/Malignant 23.6% 0.95 0.20
NSCLC_38242124__IMC__86_B1,1 Lung Primary cancer 395 Stromal 44.3% 0.64 0.76
NSCLC_38242124__IMC__86_B1,10 Lung Primary cancer 369 Tumor/Malignant 43.6% 0.88 0.34
NSCLC_38242124__IMC__86_B1,11 Lung Primary cancer 2,966 Tumor/Malignant 38.8% 0.94 0.16
NSCLC_38242124__IMC__86_B1,12 Lung Primary cancer 2,541 Tumor/Malignant 75.0% 0.99 0.03
NSCLC_38242124__IMC__86_B1,13 Lung Primary cancer 686 Tumor/Malignant 62.8% 0.95 0.17
NSCLC_38242124__IMC__86_B1,14 Lung Primary cancer 1,671 Myeloid 27.3% 0.93 0.22
NSCLC_38242124__IMC__86_B1,2 Lung Primary cancer 700 Stromal 27.9% 0.35 0.96
NSCLC_38242124__IMC__86_B1,3 Lung Primary cancer 4,357 Tumor/Malignant 80.7% 0.99 0.03
NSCLC_38242124__IMC__86_B1,4 Lung Primary cancer 2,910 Tumor/Malignant 28.4% 0.97 0.16
NSCLC_38242124__IMC__86_B1,5 Lung Primary cancer 2,072 Tumor/Malignant 75.4% 0.99 0.05
NSCLC_38242124__IMC__86_B1,6 Lung Primary cancer 2,453 Tumor/Malignant 77.2% 1.00 0.02
NSCLC_38242124__IMC__86_B1,7 Lung Primary cancer 2,948 Tumor/Malignant 72.9% 1.00 0.03
NSCLC_38242124__IMC__86_B1,8 Lung Primary cancer 2,225 Stromal 29.9% 0.94 0.19
NSCLC_38242124__IMC__86_B1,9 Lung Primary cancer 2,548 Tumor/Malignant 33.0% 0.94 0.23
NSCLC_38242124__IMC__86_B2,1 Lung Primary cancer 2,150 Tumor/Malignant 30.7% 0.89 0.32

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_A8,5 Lung Primary cancer 328 Tumor/Malignant cell 84.1% 0.98 0.08
NSCLC_38242124__IMC__86_A8,6 Lung Primary cancer 2,615 Tumor/Malignant cell 83.9% 0.99 0.04
NSCLC_38242124__IMC__86_A8,7 Lung Primary cancer 1,379 Fibroblast 45.7% 0.84 0.42
NSCLC_38242124__IMC__86_A8,8 Lung Primary cancer 3,459 Tumor/Malignant cell 57.9% 0.96 0.14
NSCLC_38242124__IMC__86_A8,9 Lung Primary cancer 3,218 Tumor/Malignant cell 30.2% 0.91 0.31
NSCLC_38242124__IMC__86_B1,1 Lung Primary cancer 395 Fibroblast 60.8% 0.36 0.99
NSCLC_38242124__IMC__86_B1,10 Lung Primary cancer 369 Tumor/Malignant cell 43.1% 0.89 0.34
NSCLC_38242124__IMC__86_B1,11 Lung Primary cancer 2,966 Tumor/Malignant cell 59.7% 0.89 0.27
NSCLC_38242124__IMC__86_B1,12 Lung Primary cancer 2,541 Tumor/Malignant cell 77.5% 0.99 0.04
NSCLC_38242124__IMC__86_B1,13 Lung Primary cancer 686 Tumor/Malignant cell 63.4% 0.94 0.18
NSCLC_38242124__IMC__86_B1,14 Lung Primary cancer 1,671 Myeloid cell, unspecified 27.8% 0.92 0.23
NSCLC_38242124__IMC__86_B1,2 Lung Primary cancer 700 Other 25.7% 0.36 1.02
NSCLC_38242124__IMC__86_B1,3 Lung Primary cancer 4,357 Tumor/Malignant cell 85.9% 0.98 0.06
NSCLC_38242124__IMC__86_B1,4 Lung Primary cancer 2,910 Tumor/Malignant cell 34.2% 0.93 0.25
NSCLC_38242124__IMC__86_B1,5 Lung Primary cancer 2,072 Tumor/Malignant cell 75.6% 0.99 0.06
NSCLC_38242124__IMC__86_B1,6 Lung Primary cancer 2,453 Tumor/Malignant cell 77.2% 1.00 0.02
NSCLC_38242124__IMC__86_B1,7 Lung Primary cancer 2,948 Tumor/Malignant cell 81.9% 0.98 0.09
NSCLC_38242124__IMC__86_B1,8 Lung Primary cancer 2,225 Fibroblast 32.0% 0.88 0.31
NSCLC_38242124__IMC__86_B1,9 Lung Primary cancer 2,548 Tumor/Malignant cell 34.8% 0.93 0.26
NSCLC_38242124__IMC__86_B2,1 Lung Primary cancer 2,150 Tumor/Malignant cell 32.2% 0.88 0.37