scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A8,5 Lung Primary cancer 328 0.08 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A8,6 Lung Primary cancer 2,615 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A8,7 Lung Primary cancer 1,379 0.03 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A8,8 Lung Primary cancer 3,459 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A8,9 Lung Primary cancer 3,218 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,1 Lung Primary cancer 395 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B1,10 Lung Primary cancer 369 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,11 Lung Primary cancer 2,966 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,12 Lung Primary cancer 2,541 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,13 Lung Primary cancer 686 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,14 Lung Primary cancer 1,671 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,2 Lung Primary cancer 700 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,3 Lung Primary cancer 4,357 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B1,4 Lung Primary cancer 2,910 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,5 Lung Primary cancer 2,072 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B1,6 Lung Primary cancer 2,453 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B1,7 Lung Primary cancer 2,948 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B1,8 Lung Primary cancer 2,225 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,9 Lung Primary cancer 2,548 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,1 Lung Primary cancer 2,150 0.23 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A8,5 Lung Primary cancer 328 0.08 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A8,6 Lung Primary cancer 2,615 0.04 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A8,7 Lung Primary cancer 1,379 0.03 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_A8,8 Lung Primary cancer 3,459 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_A8,9 Lung Primary cancer 3,218 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,1 Lung Primary cancer 395 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B1,10 Lung Primary cancer 369 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,11 Lung Primary cancer 2,966 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,12 Lung Primary cancer 2,541 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,13 Lung Primary cancer 686 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,14 Lung Primary cancer 1,671 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,2 Lung Primary cancer 700 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,3 Lung Primary cancer 4,357 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B1,4 Lung Primary cancer 2,910 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,5 Lung Primary cancer 2,072 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B1,6 Lung Primary cancer 2,453 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B1,7 Lung Primary cancer 2,948 0.12 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B1,8 Lung Primary cancer 2,225 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B1,9 Lung Primary cancer 2,548 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,1 Lung Primary cancer 2,150 0.25 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_A8,5 Lung Primary cancer 328 0.08 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A8,6 Lung Primary cancer 2,615 0.04 0.02 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A8,7 Lung Primary cancer 1,379 0.04 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_A8,8 Lung Primary cancer 3,459 0.37 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_A8,9 Lung Primary cancer 3,218 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,1 Lung Primary cancer 395 0.13 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B1,10 Lung Primary cancer 369 0.30 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,11 Lung Primary cancer 2,966 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,12 Lung Primary cancer 2,541 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,13 Lung Primary cancer 686 0.23 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,14 Lung Primary cancer 1,671 0.34 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,2 Lung Primary cancer 700 0.19 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,3 Lung Primary cancer 4,357 0.07 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B1,4 Lung Primary cancer 2,910 0.33 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,5 Lung Primary cancer 2,072 0.07 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B1,6 Lung Primary cancer 2,453 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B1,7 Lung Primary cancer 2,948 0.12 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B1,8 Lung Primary cancer 2,225 0.34 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B1,9 Lung Primary cancer 2,548 0.35 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B2,1 Lung Primary cancer 2,150 0.26 0.11 Weakly structured Weakly segregated