scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B2,11 Lung Primary cancer 405 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,12 Lung Primary cancer 2,772 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B2,13 Lung Primary cancer 3,107 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,14 Lung Primary cancer 786 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,2 Lung Primary cancer 100 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,3 Lung Primary cancer 3,266 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,4 Lung Primary cancer 3,952 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B2,5 Lung Primary cancer 1,063 0.44 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B2,6 Lung Primary cancer 3,368 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B3,1 Lung Primary cancer 3,965 0.14 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B3,10 Lung Primary cancer 3,467 0.46 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B3,11 Lung Primary cancer 1,306 0.16 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B3,12 Lung Primary cancer 4,546 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,13 Lung Primary cancer 2,355 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,14 Lung Primary cancer 959 0.04 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B3,2 Lung Primary cancer 2,582 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,3 Lung Primary cancer 4,147 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,4 Lung Primary cancer 4,451 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,6 Lung Primary cancer 2,042 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,10 Lung Primary cancer 1,347 0.03 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B2,11 Lung Primary cancer 405 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,12 Lung Primary cancer 2,772 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B2,13 Lung Primary cancer 3,107 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,14 Lung Primary cancer 786 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B2,2 Lung Primary cancer 100 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B2,3 Lung Primary cancer 3,266 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B2,4 Lung Primary cancer 3,952 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B2,5 Lung Primary cancer 1,063 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B2,6 Lung Primary cancer 3,368 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B3,1 Lung Primary cancer 3,965 0.14 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B3,10 Lung Primary cancer 3,467 0.46 0.19 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B3,11 Lung Primary cancer 1,306 0.16 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B3,12 Lung Primary cancer 4,546 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,13 Lung Primary cancer 2,355 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,14 Lung Primary cancer 959 0.04 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B3,2 Lung Primary cancer 2,582 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,3 Lung Primary cancer 4,147 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,4 Lung Primary cancer 4,451 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B3,6 Lung Primary cancer 2,042 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,10 Lung Primary cancer 1,347 0.03 0.19 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B2,11 Lung Primary cancer 405 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B2,12 Lung Primary cancer 2,772 0.36 0.15 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B2,13 Lung Primary cancer 3,107 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B2,14 Lung Primary cancer 786 0.35 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B2,2 Lung Primary cancer 100 0.19 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B2,3 Lung Primary cancer 3,266 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B2,4 Lung Primary cancer 3,952 0.43 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B2,5 Lung Primary cancer 1,063 0.44 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B2,6 Lung Primary cancer 3,368 0.07 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B3,1 Lung Primary cancer 3,965 0.14 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B3,10 Lung Primary cancer 3,467 0.46 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B3,11 Lung Primary cancer 1,306 0.17 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B3,12 Lung Primary cancer 4,546 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B3,13 Lung Primary cancer 2,355 0.23 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B3,14 Lung Primary cancer 959 0.04 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B3,2 Lung Primary cancer 2,582 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B3,3 Lung Primary cancer 4,147 0.19 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B3,4 Lung Primary cancer 4,451 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B3,6 Lung Primary cancer 2,042 0.31 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B4,10 Lung Primary cancer 1,347 0.03 0.11 Homogeneous Weakly segregated