scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B4,12 Lung Primary cancer 3,991 Tumor/Malignant 32.8% 0.52 0.91
NSCLC_38242124__IMC__86_B4,13 Lung Primary cancer 2,843 Tumor/Malignant 88.1% 1.00 0.02
NSCLC_38242124__IMC__86_B4,14 Lung Primary cancer 2,510 Tumor/Malignant 65.9% 0.97 0.09
NSCLC_38242124__IMC__86_B4,2 Lung Primary cancer 2,771 Tumor/Malignant 24.1% 0.90 0.30
NSCLC_38242124__IMC__86_B4,3 Lung Primary cancer 1,020 Stromal 31.0% 0.49 0.85
NSCLC_38242124__IMC__86_B4,5 Lung Primary cancer 291 Tumor/Malignant 67.7% 0.34 0.96
NSCLC_38242124__IMC__86_B4,6 Lung Primary cancer 310 Stromal 63.9% 0.42 0.78
NSCLC_38242124__IMC__86_B4,7 Lung Primary cancer 1,610 Tumor/Malignant 73.4% 0.98 0.07
NSCLC_38242124__IMC__86_B4,8 Lung Primary cancer 303 Tumor/Malignant 54.8% 0.45 0.78
NSCLC_38242124__IMC__86_B4,9 Lung Primary cancer 685 Stromal 35.0% 0.38 0.87
NSCLC_38242124__IMC__86_B5,1 Lung Primary cancer 3,182 Tumor/Malignant 67.1% 0.99 0.05
NSCLC_38242124__IMC__86_B5,10 Lung Primary cancer 2,357 Tumor/Malignant 53.4% 0.94 0.19
NSCLC_38242124__IMC__86_B5,12 Lung Primary cancer 137 Tumor/Malignant 52.6% 0.47 0.89
NSCLC_38242124__IMC__86_B5,13 Lung Primary cancer 3,387 Tumor/Malignant 87.7% 0.99 0.03
NSCLC_38242124__IMC__86_B5,14 Lung Primary cancer 2,142 Tumor/Malignant 30.1% 0.91 0.28
NSCLC_38242124__IMC__86_B5,2 Lung Primary cancer 2,666 Immune 45.8% 0.90 0.31
NSCLC_38242124__IMC__86_B5,3 Lung Primary cancer 3,885 Immune 29.1% 0.90 0.29
NSCLC_38242124__IMC__86_B5,4 Lung Primary cancer 2,337 Tumor/Malignant 38.2% 0.85 0.43
NSCLC_38242124__IMC__86_B5,5 Lung Primary cancer 2,876 Tumor/Malignant 50.6% 0.95 0.13
NSCLC_38242124__IMC__86_B5,6 Lung Primary cancer 3,764 Stromal 68.7% 0.96 0.11

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B4,12 Lung Primary cancer 3,991 Tumor/Malignant 29.7% 0.54 0.97
NSCLC_38242124__IMC__86_B4,13 Lung Primary cancer 2,843 Tumor/Malignant 88.3% 1.00 0.03
NSCLC_38242124__IMC__86_B4,14 Lung Primary cancer 2,510 Tumor/Malignant 56.8% 0.99 0.04
NSCLC_38242124__IMC__86_B4,2 Lung Primary cancer 2,771 Tumor/Malignant 24.6% 0.90 0.31
NSCLC_38242124__IMC__86_B4,3 Lung Primary cancer 1,020 Stromal 30.5% 0.84 0.37
NSCLC_38242124__IMC__86_B4,5 Lung Primary cancer 291 Tumor/Malignant 70.8% 0.33 0.98
NSCLC_38242124__IMC__86_B4,6 Lung Primary cancer 310 Stromal 62.9% 0.42 0.89
NSCLC_38242124__IMC__86_B4,7 Lung Primary cancer 1,610 Tumor/Malignant 68.4% 0.99 0.04
NSCLC_38242124__IMC__86_B4,8 Lung Primary cancer 303 Tumor/Malignant 54.8% 0.45 0.79
NSCLC_38242124__IMC__86_B4,9 Lung Primary cancer 685 Stromal 35.3% 0.42 0.89
NSCLC_38242124__IMC__86_B5,1 Lung Primary cancer 3,182 Tumor/Malignant 67.0% 0.99 0.05
NSCLC_38242124__IMC__86_B5,10 Lung Primary cancer 2,357 Tumor/Malignant 38.1% 0.99 0.07
NSCLC_38242124__IMC__86_B5,12 Lung Primary cancer 137 Tumor/Malignant 51.8% 0.46 0.90
NSCLC_38242124__IMC__86_B5,13 Lung Primary cancer 3,387 Tumor/Malignant 85.7% 1.00 0.02
NSCLC_38242124__IMC__86_B5,14 Lung Primary cancer 2,142 Tumor/Malignant 28.6% 0.93 0.25
NSCLC_38242124__IMC__86_B5,2 Lung Primary cancer 2,666 Lymphoid 40.7% 0.86 0.44
NSCLC_38242124__IMC__86_B5,3 Lung Primary cancer 3,885 Lymphoid 25.0% 0.90 0.30
NSCLC_38242124__IMC__86_B5,4 Lung Primary cancer 2,337 Tumor/Malignant 29.2% 0.91 0.31
NSCLC_38242124__IMC__86_B5,5 Lung Primary cancer 2,876 Tumor/Malignant 40.6% 0.97 0.12
NSCLC_38242124__IMC__86_B5,6 Lung Primary cancer 3,764 Stromal 65.0% 0.97 0.09

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B4,12 Lung Primary cancer 3,991 Tumor/Malignant cell 35.8% 0.92 0.38
NSCLC_38242124__IMC__86_B4,13 Lung Primary cancer 2,843 Tumor/Malignant cell 89.0% 0.99 0.03
NSCLC_38242124__IMC__86_B4,14 Lung Primary cancer 2,510 Tumor/Malignant cell 73.8% 0.96 0.13
NSCLC_38242124__IMC__86_B4,2 Lung Primary cancer 2,771 Tumor/Malignant cell 31.4% 0.86 0.41
NSCLC_38242124__IMC__86_B4,3 Lung Primary cancer 1,020 Fibroblast 39.0% 0.77 0.54
NSCLC_38242124__IMC__86_B4,5 Lung Primary cancer 291 Tumor/Malignant cell 70.8% 0.33 1.03
NSCLC_38242124__IMC__86_B4,6 Lung Primary cancer 310 Fibroblast 62.9% 0.33 1.05
NSCLC_38242124__IMC__86_B4,7 Lung Primary cancer 1,610 Tumor/Malignant cell 73.2% 0.98 0.07
NSCLC_38242124__IMC__86_B4,8 Lung Primary cancer 303 Tumor/Malignant cell 52.5% 0.42 0.91
NSCLC_38242124__IMC__86_B4,9 Lung Primary cancer 685 Other 34.6% 0.65 0.70
NSCLC_38242124__IMC__86_B5,1 Lung Primary cancer 3,182 Tumor/Malignant cell 67.2% 0.99 0.05
NSCLC_38242124__IMC__86_B5,10 Lung Primary cancer 2,357 Tumor/Malignant cell 52.8% 0.94 0.19
NSCLC_38242124__IMC__86_B5,12 Lung Primary cancer 137 Tumor/Malignant cell 52.6% 0.47 0.90
NSCLC_38242124__IMC__86_B5,13 Lung Primary cancer 3,387 Tumor/Malignant cell 91.7% 0.98 0.05
NSCLC_38242124__IMC__86_B5,14 Lung Primary cancer 2,142 Tumor/Malignant cell 32.5% 0.90 0.32
NSCLC_38242124__IMC__86_B5,2 Lung Primary cancer 2,666 T cell 43.8% 0.66 0.75
NSCLC_38242124__IMC__86_B5,3 Lung Primary cancer 3,885 T cell 21.6% 0.63 0.88
NSCLC_38242124__IMC__86_B5,4 Lung Primary cancer 2,337 Tumor/Malignant cell 37.4% 0.85 0.43
NSCLC_38242124__IMC__86_B5,5 Lung Primary cancer 2,876 Tumor/Malignant cell 50.7% 0.95 0.14
NSCLC_38242124__IMC__86_B5,6 Lung Primary cancer 3,764 Fibroblast 69.6% 0.92 0.18