scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B4,12 Lung Primary cancer 3,991 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,13 Lung Primary cancer 2,843 0.02 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,14 Lung Primary cancer 2,510 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,2 Lung Primary cancer 2,771 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,3 Lung Primary cancer 1,020 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,5 Lung Primary cancer 291 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,6 Lung Primary cancer 310 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,7 Lung Primary cancer 1,610 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,8 Lung Primary cancer 303 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,9 Lung Primary cancer 685 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,1 Lung Primary cancer 3,182 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B5,10 Lung Primary cancer 2,357 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,12 Lung Primary cancer 137 0.13 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B5,13 Lung Primary cancer 3,387 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B5,14 Lung Primary cancer 2,142 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,2 Lung Primary cancer 2,666 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,3 Lung Primary cancer 3,885 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,4 Lung Primary cancer 2,337 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,5 Lung Primary cancer 2,876 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B5,6 Lung Primary cancer 3,764 0.21 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B4,12 Lung Primary cancer 3,991 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,13 Lung Primary cancer 2,843 0.02 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,14 Lung Primary cancer 2,510 0.12 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B4,2 Lung Primary cancer 2,771 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,3 Lung Primary cancer 1,020 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,5 Lung Primary cancer 291 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,6 Lung Primary cancer 310 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,7 Lung Primary cancer 1,610 0.14 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,8 Lung Primary cancer 303 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B4,9 Lung Primary cancer 685 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,1 Lung Primary cancer 3,182 0.39 0.23 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B5,10 Lung Primary cancer 2,357 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B5,12 Lung Primary cancer 137 0.13 0.18 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B5,13 Lung Primary cancer 3,387 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B5,14 Lung Primary cancer 2,142 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,2 Lung Primary cancer 2,666 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,3 Lung Primary cancer 3,885 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B5,4 Lung Primary cancer 2,337 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B5,5 Lung Primary cancer 2,876 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B5,6 Lung Primary cancer 3,764 0.21 0.19 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B4,12 Lung Primary cancer 3,991 0.25 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B4,13 Lung Primary cancer 2,843 0.02 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B4,14 Lung Primary cancer 2,510 0.12 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B4,2 Lung Primary cancer 2,771 0.30 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B4,3 Lung Primary cancer 1,020 0.16 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B4,5 Lung Primary cancer 291 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B4,6 Lung Primary cancer 310 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B4,7 Lung Primary cancer 1,610 0.14 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B4,8 Lung Primary cancer 303 0.16 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B4,9 Lung Primary cancer 685 0.18 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B5,1 Lung Primary cancer 3,182 0.39 0.18 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B5,10 Lung Primary cancer 2,357 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B5,12 Lung Primary cancer 137 0.14 0.15 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B5,13 Lung Primary cancer 3,387 0.10 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B5,14 Lung Primary cancer 2,142 0.28 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B5,2 Lung Primary cancer 2,666 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B5,3 Lung Primary cancer 3,885 0.19 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B5,4 Lung Primary cancer 2,337 0.37 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B5,5 Lung Primary cancer 2,876 0.38 0.09 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B5,6 Lung Primary cancer 3,764 0.22 0.13 Weakly structured Weakly segregated