scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B5,7 Lung Primary cancer 2,625 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B5,9 Lung Primary cancer 190 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,1 Lung Primary cancer 2,720 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,10 Lung Primary cancer 2,835 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,11 Lung Primary cancer 2,424 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B6,12 Lung Primary cancer 19 0.01 0.33 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B6,13 Lung Primary cancer 3,677 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,14 Lung Primary cancer 1,447 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,2 Lung Primary cancer 3,223 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,3 Lung Primary cancer 3,951 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,4 Lung Primary cancer 918 0.02 0.25 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B6,5 Lung Primary cancer 1,799 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,6 Lung Primary cancer 3,212 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,7 Lung Primary cancer 2,833 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B6,8 Lung Primary cancer 36 0.08 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B6,9 Lung Primary cancer 1,140 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B7,1 Lung Primary cancer 2,196 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,10 Lung Primary cancer 2,888 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,11 Lung Primary cancer 51 0.11 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B7,12 Lung Primary cancer 4,398 0.34 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B5,7 Lung Primary cancer 2,625 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B5,9 Lung Primary cancer 190 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,1 Lung Primary cancer 2,720 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,10 Lung Primary cancer 2,835 0.30 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,11 Lung Primary cancer 2,424 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B6,12 Lung Primary cancer 19 0.01 0.33 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B6,13 Lung Primary cancer 3,677 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,14 Lung Primary cancer 1,447 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,2 Lung Primary cancer 3,223 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,3 Lung Primary cancer 3,951 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,4 Lung Primary cancer 918 0.02 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B6,5 Lung Primary cancer 1,799 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,6 Lung Primary cancer 3,212 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B6,7 Lung Primary cancer 2,833 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B6,8 Lung Primary cancer 36 0.08 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B6,9 Lung Primary cancer 1,140 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B7,1 Lung Primary cancer 2,196 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,10 Lung Primary cancer 2,888 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,11 Lung Primary cancer 51 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B7,12 Lung Primary cancer 4,398 0.34 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B5,7 Lung Primary cancer 2,625 0.38 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B5,9 Lung Primary cancer 190 0.30 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,1 Lung Primary cancer 2,720 0.17 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,10 Lung Primary cancer 2,835 0.30 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,11 Lung Primary cancer 2,424 0.35 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B6,12 Lung Primary cancer 19 0.01 0.33 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B6,13 Lung Primary cancer 3,677 0.21 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,14 Lung Primary cancer 1,447 0.22 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,2 Lung Primary cancer 3,223 0.34 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,3 Lung Primary cancer 3,951 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,4 Lung Primary cancer 918 0.05 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B6,5 Lung Primary cancer 1,799 0.22 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,6 Lung Primary cancer 3,212 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B6,7 Lung Primary cancer 2,833 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B6,8 Lung Primary cancer 36 0.08 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B6,9 Lung Primary cancer 1,140 0.07 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B7,1 Lung Primary cancer 2,196 0.24 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B7,10 Lung Primary cancer 2,888 0.17 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B7,11 Lung Primary cancer 51 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B7,12 Lung Primary cancer 4,398 0.35 0.12 Highly modular Weakly segregated