scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B7,14 Lung Primary cancer 3,089 Tumor/Malignant 80.0% 0.99 0.05
NSCLC_38242124__IMC__86_B7,3 Lung Primary cancer 1,944 Stromal 49.9% 0.93 0.23
NSCLC_38242124__IMC__86_B7,4 Lung Primary cancer 1,886 Tumor/Malignant 52.8% 0.99 0.04
NSCLC_38242124__IMC__86_B7,5 Lung Primary cancer 1,768 Tumor/Malignant 27.8% 0.92 0.28
NSCLC_38242124__IMC__86_B7,6 Lung Primary cancer 227 Stromal 70.9% 0.49 0.78
NSCLC_38242124__IMC__86_B7,7 Lung Primary cancer 2,579 Stromal 34.0% 0.32 1.03
NSCLC_38242124__IMC__86_B7,8 Lung Primary cancer 3,008 Stromal 38.5% 0.90 0.27
NSCLC_38242124__IMC__86_B7,9 Lung Primary cancer 1,997 Stromal 28.2% 0.72 0.65
NSCLC_38242124__IMC__86_B8,1 Lung Primary cancer 782 Other 29.4% 0.75 0.59
NSCLC_38242124__IMC__86_B8,10 Lung Primary cancer 5,311 Immune 88.1% 0.99 0.03
NSCLC_38242124__IMC__86_B8,11 Lung Primary cancer 1,030 Stromal 89.1% 0.98 0.04
NSCLC_38242124__IMC__86_B8,12 Lung Primary cancer 4,337 Tumor/Malignant 39.5% 0.94 0.20
NSCLC_38242124__IMC__86_B8,13 Lung Primary cancer 3,030 Tumor/Malignant 26.8% 0.89 0.31
NSCLC_38242124__IMC__86_B8,2 Lung Primary cancer 662 Other 31.3% 0.48 0.74
NSCLC_38242124__IMC__86_B8,3 Lung Primary cancer 1,463 Stromal 44.0% 0.89 0.35
NSCLC_38242124__IMC__86_B8,4 Lung Primary cancer 1,564 Tumor/Malignant 41.0% 0.91 0.26
NSCLC_38242124__IMC__86_B8,5 Lung Primary cancer 3,083 Other 27.6% 0.41 0.93
NSCLC_38242124__IMC__86_B8,6 Lung Primary cancer 2,756 Tumor/Malignant 71.6% 0.98 0.09
NSCLC_38242124__IMC__86_B8,7 Lung Primary cancer 2,854 Other 23.4% 0.49 0.91
NSCLC_38242124__IMC__86_B8,8 Lung Primary cancer 2,988 Tumor/Malignant 35.2% 0.96 0.12

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B7,14 Lung Primary cancer 3,089 Tumor/Malignant 75.8% 1.00 0.02
NSCLC_38242124__IMC__86_B7,3 Lung Primary cancer 1,944 Stromal 30.3% 0.99 0.05
NSCLC_38242124__IMC__86_B7,4 Lung Primary cancer 1,886 Tumor/Malignant 54.4% 1.00 0.05
NSCLC_38242124__IMC__86_B7,5 Lung Primary cancer 1,768 Tumor/Malignant 28.5% 0.92 0.30
NSCLC_38242124__IMC__86_B7,6 Lung Primary cancer 227 Stromal 70.9% 0.49 0.82
NSCLC_38242124__IMC__86_B7,7 Lung Primary cancer 2,579 Tumor/Malignant 25.3% 0.37 1.04
NSCLC_38242124__IMC__86_B7,8 Lung Primary cancer 3,008 Stromal 38.8% 0.89 0.27
NSCLC_38242124__IMC__86_B7,9 Lung Primary cancer 1,997 Stromal 29.6% 0.52 0.86
NSCLC_38242124__IMC__86_B8,1 Lung Primary cancer 782 Other 27.9% 0.76 0.57
NSCLC_38242124__IMC__86_B8,10 Lung Primary cancer 5,311 Lymphoid 84.9% 0.99 0.02
NSCLC_38242124__IMC__86_B8,11 Lung Primary cancer 1,030 Stromal 86.5% 0.99 0.03
NSCLC_38242124__IMC__86_B8,12 Lung Primary cancer 4,337 Tumor/Malignant 35.1% 0.97 0.13
NSCLC_38242124__IMC__86_B8,13 Lung Primary cancer 3,030 Tumor/Malignant 26.7% 0.89 0.31
NSCLC_38242124__IMC__86_B8,2 Lung Primary cancer 662 Other 31.4% 0.48 0.75
NSCLC_38242124__IMC__86_B8,3 Lung Primary cancer 1,463 Stromal 35.6% 0.92 0.29
NSCLC_38242124__IMC__86_B8,4 Lung Primary cancer 1,564 Tumor/Malignant 27.6% 0.75 0.62
NSCLC_38242124__IMC__86_B8,5 Lung Primary cancer 3,083 Stromal 23.9% 0.28 1.11
NSCLC_38242124__IMC__86_B8,6 Lung Primary cancer 2,756 Tumor/Malignant 71.8% 0.98 0.09
NSCLC_38242124__IMC__86_B8,7 Lung Primary cancer 2,854 Stromal 24.1% 0.31 1.14
NSCLC_38242124__IMC__86_B8,8 Lung Primary cancer 2,988 Tumor/Malignant 35.1% 0.96 0.12

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B7,14 Lung Primary cancer 3,089 Tumor/Malignant cell 81.4% 0.99 0.06
NSCLC_38242124__IMC__86_B7,3 Lung Primary cancer 1,944 Fibroblast 45.2% 0.93 0.24
NSCLC_38242124__IMC__86_B7,4 Lung Primary cancer 1,886 Tumor/Malignant cell 54.2% 0.99 0.06
NSCLC_38242124__IMC__86_B7,5 Lung Primary cancer 1,768 Tumor/Malignant cell 39.3% 0.85 0.43
NSCLC_38242124__IMC__86_B7,6 Lung Primary cancer 227 Fibroblast 69.6% 0.47 0.88
NSCLC_38242124__IMC__86_B7,7 Lung Primary cancer 2,579 Fibroblast 28.7% 0.71 0.74
NSCLC_38242124__IMC__86_B7,8 Lung Primary cancer 3,008 Fibroblast 41.4% 0.84 0.39
NSCLC_38242124__IMC__86_B7,9 Lung Primary cancer 1,997 Endothelial cell 27.4% 0.59 0.86
NSCLC_38242124__IMC__86_B8,1 Lung Primary cancer 782 Endothelial cell 34.8% 0.44 0.86
NSCLC_38242124__IMC__86_B8,10 Lung Primary cancer 5,311 B cell 85.6% 0.84 0.26
NSCLC_38242124__IMC__86_B8,11 Lung Primary cancer 1,030 Fibroblast 83.4% 0.99 0.04
NSCLC_38242124__IMC__86_B8,12 Lung Primary cancer 4,337 Tumor/Malignant cell 39.5% 0.94 0.22
NSCLC_38242124__IMC__86_B8,13 Lung Primary cancer 3,030 Tumor/Malignant cell 40.0% 0.81 0.48
NSCLC_38242124__IMC__86_B8,2 Lung Primary cancer 662 Other 31.3% 0.46 0.80
NSCLC_38242124__IMC__86_B8,3 Lung Primary cancer 1,463 Fibroblast 38.8% 0.86 0.40
NSCLC_38242124__IMC__86_B8,4 Lung Primary cancer 1,564 Tumor/Malignant cell 43.0% 0.90 0.29
NSCLC_38242124__IMC__86_B8,5 Lung Primary cancer 3,083 Other 24.4% 0.44 1.11
NSCLC_38242124__IMC__86_B8,6 Lung Primary cancer 2,756 Tumor/Malignant cell 81.1% 0.96 0.13
NSCLC_38242124__IMC__86_B8,7 Lung Primary cancer 2,854 Fibroblast 24.7% 0.70 0.73
NSCLC_38242124__IMC__86_B8,8 Lung Primary cancer 2,988 Fibroblast 37.1% 0.91 0.25