scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B7,14 Lung Primary cancer 3,089 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,3 Lung Primary cancer 1,944 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,4 Lung Primary cancer 1,886 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B7,5 Lung Primary cancer 1,768 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,6 Lung Primary cancer 227 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,7 Lung Primary cancer 2,579 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,8 Lung Primary cancer 3,008 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,9 Lung Primary cancer 1,997 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,1 Lung Primary cancer 782 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,10 Lung Primary cancer 5,311 0.03 0.33 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,11 Lung Primary cancer 1,030 0.03 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,12 Lung Primary cancer 4,337 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B8,13 Lung Primary cancer 3,030 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,2 Lung Primary cancer 662 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,3 Lung Primary cancer 1,463 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,4 Lung Primary cancer 1,564 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,5 Lung Primary cancer 3,083 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,6 Lung Primary cancer 2,756 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,7 Lung Primary cancer 2,854 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,8 Lung Primary cancer 2,988 0.40 0.20 Highly modular Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B7,14 Lung Primary cancer 3,089 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,3 Lung Primary cancer 1,944 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,4 Lung Primary cancer 1,886 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B7,5 Lung Primary cancer 1,768 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,6 Lung Primary cancer 227 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,7 Lung Primary cancer 2,579 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,8 Lung Primary cancer 3,008 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B7,9 Lung Primary cancer 1,997 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,1 Lung Primary cancer 782 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,10 Lung Primary cancer 5,311 0.03 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,11 Lung Primary cancer 1,030 0.03 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,12 Lung Primary cancer 4,337 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_B8,13 Lung Primary cancer 3,030 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,2 Lung Primary cancer 662 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,3 Lung Primary cancer 1,463 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,4 Lung Primary cancer 1,564 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,5 Lung Primary cancer 3,083 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,6 Lung Primary cancer 2,756 0.06 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,7 Lung Primary cancer 2,854 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_B8,8 Lung Primary cancer 2,988 0.40 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B7,14 Lung Primary cancer 3,089 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B7,3 Lung Primary cancer 1,944 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B7,4 Lung Primary cancer 1,886 0.11 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B7,5 Lung Primary cancer 1,768 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B7,6 Lung Primary cancer 227 0.32 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B7,7 Lung Primary cancer 2,579 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B7,8 Lung Primary cancer 3,008 0.24 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B7,9 Lung Primary cancer 1,997 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B8,1 Lung Primary cancer 782 0.11 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,10 Lung Primary cancer 5,311 0.15 0.18 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_B8,11 Lung Primary cancer 1,030 0.04 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,12 Lung Primary cancer 4,337 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_B8,13 Lung Primary cancer 3,030 0.27 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B8,2 Lung Primary cancer 662 0.13 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,3 Lung Primary cancer 1,463 0.15 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,4 Lung Primary cancer 1,564 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B8,5 Lung Primary cancer 3,083 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B8,6 Lung Primary cancer 2,756 0.06 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_B8,7 Lung Primary cancer 2,854 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_B8,8 Lung Primary cancer 2,988 0.40 0.09 Highly modular Weakly segregated