scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B8,9 Lung Primary cancer 2,955 Tumor/Malignant 43.8% 0.87 0.35
NSCLC_38242124__IMC__86_C1,1 Lung Primary cancer 1,909 Tumor/Malignant 56.7% 0.98 0.05
NSCLC_38242124__IMC__86_C1,11 Lung Primary cancer 2,827 Tumor/Malignant 44.5% 0.96 0.15
NSCLC_38242124__IMC__86_C1,12 Lung Primary cancer 3,405 Tumor/Malignant 35.4% 0.46 0.84
NSCLC_38242124__IMC__86_C1,3 Lung Primary cancer 3,623 Tumor/Malignant 64.1% 1.00 0.03
NSCLC_38242124__IMC__86_C1,4 Lung Primary cancer 3,712 Tumor/Malignant 91.3% 0.99 0.04
NSCLC_38242124__IMC__86_C2,10 Lung Primary cancer 1,720 Stromal 29.2% 0.79 0.47
NSCLC_38242124__IMC__86_C2,11 Lung Primary cancer 558 Tumor/Malignant 37.1% 0.69 0.64
NSCLC_38242124__IMC__86_C2,12 Lung Primary cancer 888 Stromal 45.5% 0.86 0.39
NSCLC_38242124__IMC__86_C2,14 Lung Primary cancer 1,996 Tumor/Malignant 28.6% 0.95 0.14
NSCLC_38242124__IMC__86_C2,3 Lung Primary cancer 2,535 Tumor/Malignant 54.9% 0.97 0.10
NSCLC_38242124__IMC__86_C2,4 Lung Primary cancer 3,494 Tumor/Malignant 55.6% 0.98 0.07
NSCLC_38242124__IMC__86_C2,6 Lung Primary cancer 3,518 Tumor/Malignant 84.5% 0.99 0.03
NSCLC_38242124__IMC__86_C2,9 Lung Primary cancer 416 Tumor/Malignant 79.8% 0.99 0.04
NSCLC_38242124__IMC__86_C3,1 Lung Primary cancer 4,253 Tumor/Malignant 72.2% 0.99 0.03
NSCLC_38242124__IMC__86_C3,11 Lung Primary cancer 2,737 Tumor/Malignant 80.4% 0.98 0.05
NSCLC_38242124__IMC__86_C3,12 Lung Primary cancer 2,904 Tumor/Malignant 51.7% 0.97 0.13
NSCLC_38242124__IMC__86_C3,14 Lung Primary cancer 1,663 Other 30.4% 0.51 0.87
NSCLC_38242124__IMC__86_C3,3 Lung Primary cancer 3,442 Tumor/Malignant 31.3% 0.96 0.17
NSCLC_38242124__IMC__86_C3,5 Lung Primary cancer 3,005 Immune 42.4% 0.87 0.34

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B8,9 Lung Primary cancer 2,955 Tumor/Malignant 34.1% 0.93 0.22
NSCLC_38242124__IMC__86_C1,1 Lung Primary cancer 1,909 Tumor/Malignant 56.5% 0.98 0.05
NSCLC_38242124__IMC__86_C1,11 Lung Primary cancer 2,827 Tumor/Malignant 41.2% 0.97 0.11
NSCLC_38242124__IMC__86_C1,12 Lung Primary cancer 3,405 Tumor/Malignant 33.6% 0.47 0.85
NSCLC_38242124__IMC__86_C1,3 Lung Primary cancer 3,623 Tumor/Malignant 54.8% 0.99 0.03
NSCLC_38242124__IMC__86_C1,4 Lung Primary cancer 3,712 Tumor/Malignant 88.1% 1.00 0.02
NSCLC_38242124__IMC__86_C2,10 Lung Primary cancer 1,720 Stromal 25.8% 0.53 0.88
NSCLC_38242124__IMC__86_C2,11 Lung Primary cancer 558 Tumor/Malignant 34.9% 0.70 0.63
NSCLC_38242124__IMC__86_C2,12 Lung Primary cancer 888 Stromal 40.4% 0.77 0.53
NSCLC_38242124__IMC__86_C2,14 Lung Primary cancer 1,996 Tumor/Malignant 28.4% 0.96 0.14
NSCLC_38242124__IMC__86_C2,3 Lung Primary cancer 2,535 Tumor/Malignant 55.0% 0.97 0.10
NSCLC_38242124__IMC__86_C2,4 Lung Primary cancer 3,494 Tumor/Malignant 50.9% 0.98 0.07
NSCLC_38242124__IMC__86_C2,6 Lung Primary cancer 3,518 Tumor/Malignant 81.2% 0.99 0.03
NSCLC_38242124__IMC__86_C2,9 Lung Primary cancer 416 Tumor/Malignant 79.8% 0.99 0.04
NSCLC_38242124__IMC__86_C3,1 Lung Primary cancer 4,253 Tumor/Malignant 69.6% 1.00 0.02
NSCLC_38242124__IMC__86_C3,11 Lung Primary cancer 2,737 Tumor/Malignant 75.2% 1.00 0.01
NSCLC_38242124__IMC__86_C3,12 Lung Primary cancer 2,904 Tumor/Malignant 52.3% 0.97 0.14
NSCLC_38242124__IMC__86_C3,14 Lung Primary cancer 1,663 Stromal 20.1% 0.31 1.05
NSCLC_38242124__IMC__86_C3,3 Lung Primary cancer 3,442 Tumor/Malignant 29.9% 0.97 0.14
NSCLC_38242124__IMC__86_C3,5 Lung Primary cancer 3,005 Lymphoid 30.3% 0.90 0.29

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__86_B8,9 Lung Primary cancer 2,955 Tumor/Malignant cell 45.1% 0.86 0.36
NSCLC_38242124__IMC__86_C1,1 Lung Primary cancer 1,909 Tumor/Malignant cell 56.4% 0.98 0.05
NSCLC_38242124__IMC__86_C1,11 Lung Primary cancer 2,827 Tumor/Malignant cell 43.8% 0.96 0.15
NSCLC_38242124__IMC__86_C1,12 Lung Primary cancer 3,405 Fibroblast 31.5% 0.69 0.72
NSCLC_38242124__IMC__86_C1,3 Lung Primary cancer 3,623 Tumor/Malignant cell 64.7% 0.99 0.04
NSCLC_38242124__IMC__86_C1,4 Lung Primary cancer 3,712 Tumor/Malignant cell 91.0% 0.99 0.04
NSCLC_38242124__IMC__86_C2,10 Lung Primary cancer 1,720 Fibroblast 24.3% 0.81 0.47
NSCLC_38242124__IMC__86_C2,11 Lung Primary cancer 558 Tumor/Malignant cell 33.9% 0.71 0.63
NSCLC_38242124__IMC__86_C2,12 Lung Primary cancer 888 Fibroblast 44.4% 0.83 0.42
NSCLC_38242124__IMC__86_C2,14 Lung Primary cancer 1,996 Tumor/Malignant cell 28.9% 0.95 0.16
NSCLC_38242124__IMC__86_C2,3 Lung Primary cancer 2,535 Tumor/Malignant cell 54.9% 0.97 0.10
NSCLC_38242124__IMC__86_C2,4 Lung Primary cancer 3,494 Tumor/Malignant cell 56.4% 0.98 0.09
NSCLC_38242124__IMC__86_C2,6 Lung Primary cancer 3,518 Tumor/Malignant cell 84.7% 0.99 0.04
NSCLC_38242124__IMC__86_C2,9 Lung Primary cancer 416 Tumor/Malignant cell 79.8% 0.99 0.04
NSCLC_38242124__IMC__86_C3,1 Lung Primary cancer 4,253 Tumor/Malignant cell 86.8% 0.99 0.03
NSCLC_38242124__IMC__86_C3,11 Lung Primary cancer 2,737 Tumor/Malignant cell 80.4% 0.98 0.05
NSCLC_38242124__IMC__86_C3,12 Lung Primary cancer 2,904 Tumor/Malignant cell 54.2% 0.96 0.16
NSCLC_38242124__IMC__86_C3,14 Lung Primary cancer 1,663 Fibroblast 24.2% 0.47 0.94
NSCLC_38242124__IMC__86_C3,3 Lung Primary cancer 3,442 Tumor/Malignant cell 32.0% 0.96 0.19
NSCLC_38242124__IMC__86_C3,5 Lung Primary cancer 3,005 B cell 46.5% 0.66 0.72