scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B8,9 Lung Primary cancer 2,955 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C1,1 Lung Primary cancer 1,909 0.45 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C1,11 Lung Primary cancer 2,827 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C1,12 Lung Primary cancer 3,405 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C1,3 Lung Primary cancer 3,623 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C1,4 Lung Primary cancer 3,712 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C2,10 Lung Primary cancer 1,720 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C2,11 Lung Primary cancer 558 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C2,12 Lung Primary cancer 888 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C2,14 Lung Primary cancer 1,996 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C2,3 Lung Primary cancer 2,535 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C2,4 Lung Primary cancer 3,494 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C2,6 Lung Primary cancer 3,518 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C2,9 Lung Primary cancer 416 0.12 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C3,1 Lung Primary cancer 4,253 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,11 Lung Primary cancer 2,737 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,12 Lung Primary cancer 2,904 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,14 Lung Primary cancer 1,663 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,3 Lung Primary cancer 3,442 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,5 Lung Primary cancer 3,005 0.33 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B8,9 Lung Primary cancer 2,955 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C1,1 Lung Primary cancer 1,909 0.45 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C1,11 Lung Primary cancer 2,827 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C1,12 Lung Primary cancer 3,405 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C1,3 Lung Primary cancer 3,623 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C1,4 Lung Primary cancer 3,712 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C2,10 Lung Primary cancer 1,720 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C2,11 Lung Primary cancer 558 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C2,12 Lung Primary cancer 888 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C2,14 Lung Primary cancer 1,996 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C2,3 Lung Primary cancer 2,535 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C2,4 Lung Primary cancer 3,494 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C2,6 Lung Primary cancer 3,518 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C2,9 Lung Primary cancer 416 0.12 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C3,1 Lung Primary cancer 4,253 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,11 Lung Primary cancer 2,737 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C3,12 Lung Primary cancer 2,904 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,14 Lung Primary cancer 1,663 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,3 Lung Primary cancer 3,442 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,5 Lung Primary cancer 3,005 0.36 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_B8,9 Lung Primary cancer 2,955 0.28 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C1,1 Lung Primary cancer 1,909 0.45 0.15 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_C1,11 Lung Primary cancer 2,827 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C1,12 Lung Primary cancer 3,405 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C1,3 Lung Primary cancer 3,623 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C1,4 Lung Primary cancer 3,712 0.07 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C2,10 Lung Primary cancer 1,720 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C2,11 Lung Primary cancer 558 0.17 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C2,12 Lung Primary cancer 888 0.09 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C2,14 Lung Primary cancer 1,996 0.41 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_C2,3 Lung Primary cancer 2,535 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C2,4 Lung Primary cancer 3,494 0.43 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_C2,6 Lung Primary cancer 3,518 0.19 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C2,9 Lung Primary cancer 416 0.12 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C3,1 Lung Primary cancer 4,253 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C3,11 Lung Primary cancer 2,737 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C3,12 Lung Primary cancer 2,904 0.32 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C3,14 Lung Primary cancer 1,663 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C3,3 Lung Primary cancer 3,442 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C3,5 Lung Primary cancer 3,005 0.37 0.13 Highly modular Weakly segregated