scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_C3,6 Lung Primary cancer 3,758 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,7 Lung Primary cancer 4,140 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,9 Lung Primary cancer 2,739 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,1 Lung Primary cancer 2,359 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,10 Lung Primary cancer 3,299 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C4,11 Lung Primary cancer 1,825 0.30 0.26 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,12 Lung Primary cancer 2,589 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,13 Lung Primary cancer 1,103 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C4,3 Lung Primary cancer 1,126 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C4,5 Lung Primary cancer 2,882 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,7 Lung Primary cancer 3,469 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,8 Lung Primary cancer 2,960 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,9 Lung Primary cancer 1,591 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C5,1 Lung Primary cancer 3,797 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C5,10 Lung Primary cancer 2,758 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C5,4 Lung Primary cancer 228 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C5,6 Lung Primary cancer 700 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C5,9 Lung Primary cancer 3,437 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C6,1 Lung Primary cancer 3,873 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C6,10 Lung Primary cancer 5,526 0.33 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_C3,6 Lung Primary cancer 3,758 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,7 Lung Primary cancer 4,140 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C3,9 Lung Primary cancer 2,739 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,1 Lung Primary cancer 2,359 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,10 Lung Primary cancer 3,299 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C4,11 Lung Primary cancer 1,825 0.30 0.23 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,12 Lung Primary cancer 2,589 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,13 Lung Primary cancer 1,103 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C4,3 Lung Primary cancer 1,126 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C4,5 Lung Primary cancer 2,882 0.24 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,7 Lung Primary cancer 3,469 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,8 Lung Primary cancer 2,960 0.24 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C4,9 Lung Primary cancer 1,591 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C5,1 Lung Primary cancer 3,797 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C5,10 Lung Primary cancer 2,758 0.27 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C5,4 Lung Primary cancer 228 0.14 0.05 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C5,6 Lung Primary cancer 700 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C5,9 Lung Primary cancer 3,437 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C6,1 Lung Primary cancer 3,873 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C6,10 Lung Primary cancer 5,526 0.33 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_C3,6 Lung Primary cancer 3,758 0.17 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C3,7 Lung Primary cancer 4,140 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C3,9 Lung Primary cancer 2,739 0.33 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C4,1 Lung Primary cancer 2,359 0.20 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C4,10 Lung Primary cancer 3,299 0.41 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_C4,11 Lung Primary cancer 1,825 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C4,12 Lung Primary cancer 2,589 0.32 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C4,13 Lung Primary cancer 1,103 0.12 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C4,3 Lung Primary cancer 1,126 0.13 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C4,5 Lung Primary cancer 2,882 0.24 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C4,7 Lung Primary cancer 3,469 0.26 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C4,8 Lung Primary cancer 2,960 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C4,9 Lung Primary cancer 1,591 0.10 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C5,1 Lung Primary cancer 3,797 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C5,10 Lung Primary cancer 2,758 0.28 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C5,4 Lung Primary cancer 228 0.15 0.06 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C5,6 Lung Primary cancer 700 0.20 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C5,9 Lung Primary cancer 3,437 0.42 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_C6,1 Lung Primary cancer 3,873 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C6,10 Lung Primary cancer 5,526 0.33 0.08 Weakly structured Weakly segregated