scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_C6,11 Lung Primary cancer 2,196 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C6,6 Lung Primary cancer 2,518 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C6,8 Lung Primary cancer 2,712 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C7,1 Lung Primary cancer 3,644 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C7,14 Lung Primary cancer 4,956 0.02 0.33 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C7,4 Lung Primary cancer 4,395 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C7,6 Lung Primary cancer 4,721 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C7,7 Lung Primary cancer 412 0.12 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C8,1 Lung Primary cancer 4,014 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C8,14 Lung Primary cancer 941 0.19 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C8,2 Lung Primary cancer 3,875 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C8,4 Lung Primary cancer 2,468 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C8,7 Lung Primary cancer 2,709 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,1 Lung Primary cancer 477 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,10 Lung Primary cancer 4,368 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A1,11 Lung Primary cancer 3,901 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,12 Lung Primary cancer 4,837 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A1,13 Lung Primary cancer 2,263 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,14 Lung Primary cancer 3,547 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,15 Lung Primary cancer 4,762 0.42 0.20 Highly modular Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_C6,11 Lung Primary cancer 2,196 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C6,6 Lung Primary cancer 2,518 0.28 0.19 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C6,8 Lung Primary cancer 2,712 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C7,1 Lung Primary cancer 3,644 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__86_C7,14 Lung Primary cancer 4,956 0.02 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C7,4 Lung Primary cancer 4,395 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C7,6 Lung Primary cancer 4,721 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C7,7 Lung Primary cancer 412 0.12 0.04 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C8,1 Lung Primary cancer 4,014 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__86_C8,14 Lung Primary cancer 941 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C8,2 Lung Primary cancer 3,875 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C8,4 Lung Primary cancer 2,468 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__86_C8,7 Lung Primary cancer 2,709 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,1 Lung Primary cancer 477 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,10 Lung Primary cancer 4,368 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A1,11 Lung Primary cancer 3,901 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,12 Lung Primary cancer 4,837 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A1,13 Lung Primary cancer 2,263 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,14 Lung Primary cancer 3,547 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,15 Lung Primary cancer 4,762 0.42 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__86_C6,11 Lung Primary cancer 2,196 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C6,6 Lung Primary cancer 2,518 0.28 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C6,8 Lung Primary cancer 2,712 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C7,1 Lung Primary cancer 3,644 0.42 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__86_C7,14 Lung Primary cancer 4,956 0.12 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C7,4 Lung Primary cancer 4,395 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C7,6 Lung Primary cancer 4,721 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C7,7 Lung Primary cancer 412 0.12 0.04 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C8,1 Lung Primary cancer 4,014 0.07 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__86_C8,14 Lung Primary cancer 941 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C8,2 Lung Primary cancer 3,875 0.34 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C8,4 Lung Primary cancer 2,468 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__86_C8,7 Lung Primary cancer 2,709 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,1 Lung Primary cancer 477 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,10 Lung Primary cancer 4,368 0.40 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A1,11 Lung Primary cancer 3,901 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,12 Lung Primary cancer 4,837 0.39 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A1,13 Lung Primary cancer 2,263 0.27 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,14 Lung Primary cancer 3,547 0.26 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,15 Lung Primary cancer 4,762 0.42 0.11 Highly modular Weakly segregated