scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

Download spatial tables

Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A1,16 Lung Primary cancer 3,543 Stromal 32.5% 0.41 0.92
NSCLC_38242124__IMC__87_A1,17 Lung Primary cancer 2,370 Tumor/Malignant 42.9% 0.96 0.16
NSCLC_38242124__IMC__87_A1,2 Lung Primary cancer 2,918 Stromal 33.7% 0.64 0.76
NSCLC_38242124__IMC__87_A1,3 Lung Primary cancer 4,326 Tumor/Malignant 36.7% 0.93 0.18
NSCLC_38242124__IMC__87_A1,4 Lung Primary cancer 3,799 Immune 28.9% 0.88 0.38
NSCLC_38242124__IMC__87_A1,5 Lung Primary cancer 3,344 Tumor/Malignant 92.4% 1.00 0.02
NSCLC_38242124__IMC__87_A1,6 Lung Primary cancer 4,178 Tumor/Malignant 58.8% 0.92 0.21
NSCLC_38242124__IMC__87_A1,7 Lung Primary cancer 3,630 Tumor/Malignant 73.7% 0.96 0.14
NSCLC_38242124__IMC__87_A1,8 Lung Primary cancer 3,400 Tumor/Malignant 61.0% 0.97 0.14
NSCLC_38242124__IMC__87_A1,9 Lung Primary cancer 3,996 Stromal 30.3% 0.89 0.32
NSCLC_38242124__IMC__87_A2,1 Lung Primary cancer 1,284 Other 29.5% 0.84 0.44
NSCLC_38242124__IMC__87_A2,10 Lung Primary cancer 2,615 Tumor/Malignant 63.6% 0.97 0.13
NSCLC_38242124__IMC__87_A2,11 Lung Primary cancer 3,664 Tumor/Malignant 67.3% 0.98 0.09
NSCLC_38242124__IMC__87_A2,12 Lung Primary cancer 3,796 Tumor/Malignant 46.9% 0.96 0.15
NSCLC_38242124__IMC__87_A2,13 Lung Primary cancer 2,020 Tumor/Malignant 34.8% 0.86 0.36
NSCLC_38242124__IMC__87_A2,14 Lung Primary cancer 3,300 Tumor/Malignant 62.7% 0.96 0.14
NSCLC_38242124__IMC__87_A2,15 Lung Primary cancer 3,874 Stromal 33.5% 0.52 0.78
NSCLC_38242124__IMC__87_A2,16 Lung Primary cancer 4,343 Tumor/Malignant 26.9% 0.71 0.70
NSCLC_38242124__IMC__87_A2,17 Lung Primary cancer 2,873 Stromal 34.3% 0.56 0.83
NSCLC_38242124__IMC__87_A2,2 Lung Primary cancer 2,830 Stromal 26.5% 0.67 0.71

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A1,16 Lung Primary cancer 3,543 Stromal 30.8% 0.54 0.88
NSCLC_38242124__IMC__87_A1,17 Lung Primary cancer 2,370 Tumor/Malignant 43.2% 0.96 0.16
NSCLC_38242124__IMC__87_A1,2 Lung Primary cancer 2,918 Stromal 26.8% 0.38 1.08
NSCLC_38242124__IMC__87_A1,3 Lung Primary cancer 4,326 Tumor/Malignant 36.1% 0.94 0.18
NSCLC_38242124__IMC__87_A1,4 Lung Primary cancer 3,799 Lymphoid 25.7% 0.82 0.42
NSCLC_38242124__IMC__87_A1,5 Lung Primary cancer 3,344 Tumor/Malignant 87.0% 1.00 0.01
NSCLC_38242124__IMC__87_A1,6 Lung Primary cancer 4,178 Tumor/Malignant 36.9% 0.99 0.05
NSCLC_38242124__IMC__87_A1,7 Lung Primary cancer 3,630 Tumor/Malignant 71.0% 0.96 0.14
NSCLC_38242124__IMC__87_A1,8 Lung Primary cancer 3,400 Tumor/Malignant 38.4% 0.94 0.19
NSCLC_38242124__IMC__87_A1,9 Lung Primary cancer 3,996 Stromal 31.9% 0.88 0.34
NSCLC_38242124__IMC__87_A2,1 Lung Primary cancer 1,284 Other 23.8% 0.89 0.40
NSCLC_38242124__IMC__87_A2,10 Lung Primary cancer 2,615 Tumor/Malignant 41.9% 0.97 0.10
NSCLC_38242124__IMC__87_A2,11 Lung Primary cancer 3,664 Tumor/Malignant 67.5% 0.98 0.09
NSCLC_38242124__IMC__87_A2,12 Lung Primary cancer 3,796 Tumor/Malignant 44.9% 0.97 0.13
NSCLC_38242124__IMC__87_A2,13 Lung Primary cancer 2,020 Tumor/Malignant 26.1% 0.91 0.22
NSCLC_38242124__IMC__87_A2,14 Lung Primary cancer 3,300 Tumor/Malignant 49.6% 1.00 0.04
NSCLC_38242124__IMC__87_A2,15 Lung Primary cancer 3,874 Stromal 25.1% 0.87 0.35
NSCLC_38242124__IMC__87_A2,16 Lung Primary cancer 4,343 Lymphoid 25.1% 0.36 1.08
NSCLC_38242124__IMC__87_A2,17 Lung Primary cancer 2,873 Stromal 30.3% 0.55 0.95
NSCLC_38242124__IMC__87_A2,2 Lung Primary cancer 2,830 Lymphoid 24.4% 0.83 0.42

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A1,16 Lung Primary cancer 3,543 Fibroblast 34.5% 0.65 0.79
NSCLC_38242124__IMC__87_A1,17 Lung Primary cancer 2,370 Tumor/Malignant cell 42.9% 0.96 0.16
NSCLC_38242124__IMC__87_A1,2 Lung Primary cancer 2,918 Fibroblast 36.3% 0.45 1.07
NSCLC_38242124__IMC__87_A1,3 Lung Primary cancer 4,326 Tumor/Malignant cell 36.9% 0.93 0.20
NSCLC_38242124__IMC__87_A1,4 Lung Primary cancer 3,799 Myeloid cell, unspecified 33.0% 0.36 1.02
NSCLC_38242124__IMC__87_A1,5 Lung Primary cancer 3,344 Tumor/Malignant cell 92.6% 0.99 0.02
NSCLC_38242124__IMC__87_A1,6 Lung Primary cancer 4,178 Tumor/Malignant cell 58.9% 0.92 0.21
NSCLC_38242124__IMC__87_A1,7 Lung Primary cancer 3,630 Tumor/Malignant cell 58.8% 0.99 0.05
NSCLC_38242124__IMC__87_A1,8 Lung Primary cancer 3,400 Tumor/Malignant cell 60.6% 0.97 0.14
NSCLC_38242124__IMC__87_A1,9 Lung Primary cancer 3,996 Fibroblast 24.6% 0.85 0.46
NSCLC_38242124__IMC__87_A2,1 Lung Primary cancer 1,284 Other 33.4% 0.83 0.48
NSCLC_38242124__IMC__87_A2,10 Lung Primary cancer 2,615 Tumor/Malignant cell 62.6% 0.97 0.12
NSCLC_38242124__IMC__87_A2,11 Lung Primary cancer 3,664 Tumor/Malignant cell 67.4% 0.98 0.09
NSCLC_38242124__IMC__87_A2,12 Lung Primary cancer 3,796 Tumor/Malignant cell 46.0% 0.96 0.15
NSCLC_38242124__IMC__87_A2,13 Lung Primary cancer 2,020 Tumor/Malignant cell 34.8% 0.86 0.39
NSCLC_38242124__IMC__87_A2,14 Lung Primary cancer 3,300 Tumor/Malignant cell 62.7% 0.97 0.14
NSCLC_38242124__IMC__87_A2,15 Lung Primary cancer 3,874 Fibroblast 31.8% 0.82 0.48
NSCLC_38242124__IMC__87_A2,16 Lung Primary cancer 4,343 T cell 25.4% 0.46 1.03
NSCLC_38242124__IMC__87_A2,17 Lung Primary cancer 2,873 Fibroblast 29.6% 0.68 0.74
NSCLC_38242124__IMC__87_A2,2 Lung Primary cancer 2,830 B cell 26.6% 0.42 0.82