scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A1,16 Lung Primary cancer 3,543 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,17 Lung Primary cancer 2,370 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A1,2 Lung Primary cancer 2,918 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A1,3 Lung Primary cancer 4,326 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A1,4 Lung Primary cancer 3,799 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,5 Lung Primary cancer 3,344 0.06 -0.02 Homogeneous Weakly mixed
NSCLC_38242124__IMC__87_A1,6 Lung Primary cancer 4,178 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,7 Lung Primary cancer 3,630 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A1,8 Lung Primary cancer 3,400 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,9 Lung Primary cancer 3,996 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,1 Lung Primary cancer 1,284 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A2,10 Lung Primary cancer 2,615 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,11 Lung Primary cancer 3,664 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,12 Lung Primary cancer 3,796 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A2,13 Lung Primary cancer 2,020 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,14 Lung Primary cancer 3,300 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,15 Lung Primary cancer 3,874 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,16 Lung Primary cancer 4,343 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,17 Lung Primary cancer 2,873 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,2 Lung Primary cancer 2,830 0.19 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A1,16 Lung Primary cancer 3,543 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,17 Lung Primary cancer 2,370 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A1,2 Lung Primary cancer 2,918 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,3 Lung Primary cancer 4,326 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A1,4 Lung Primary cancer 3,799 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,5 Lung Primary cancer 3,344 0.06 -0.05 Homogeneous Weakly mixed
NSCLC_38242124__IMC__87_A1,6 Lung Primary cancer 4,178 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,7 Lung Primary cancer 3,630 0.13 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A1,8 Lung Primary cancer 3,400 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A1,9 Lung Primary cancer 3,996 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,1 Lung Primary cancer 1,284 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A2,10 Lung Primary cancer 2,615 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,11 Lung Primary cancer 3,664 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,12 Lung Primary cancer 3,796 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A2,13 Lung Primary cancer 2,020 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,14 Lung Primary cancer 3,300 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,15 Lung Primary cancer 3,874 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,16 Lung Primary cancer 4,343 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,17 Lung Primary cancer 2,873 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,2 Lung Primary cancer 2,830 0.23 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A1,16 Lung Primary cancer 3,543 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,17 Lung Primary cancer 2,370 0.39 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A1,2 Lung Primary cancer 2,918 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,3 Lung Primary cancer 4,326 0.39 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A1,4 Lung Primary cancer 3,799 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,5 Lung Primary cancer 3,344 0.06 0.02 Homogeneous Neutral
NSCLC_38242124__IMC__87_A1,6 Lung Primary cancer 4,178 0.25 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,7 Lung Primary cancer 3,630 0.13 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A1,8 Lung Primary cancer 3,400 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A1,9 Lung Primary cancer 3,996 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,1 Lung Primary cancer 1,284 0.13 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A2,10 Lung Primary cancer 2,615 0.28 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,11 Lung Primary cancer 3,664 0.29 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,12 Lung Primary cancer 3,796 0.40 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A2,13 Lung Primary cancer 2,020 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,14 Lung Primary cancer 3,300 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,15 Lung Primary cancer 3,874 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,16 Lung Primary cancer 4,343 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,17 Lung Primary cancer 2,873 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,2 Lung Primary cancer 2,830 0.23 0.11 Weakly structured Weakly segregated