scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A2,3 Lung Primary cancer 4,628 Tumor/Malignant 38.9% 0.88 0.30
NSCLC_38242124__IMC__87_A2,4 Lung Primary cancer 4,085 Tumor/Malignant 41.3% 0.97 0.15
NSCLC_38242124__IMC__87_A2,5 Lung Primary cancer 3,425 Tumor/Malignant 50.1% 0.96 0.13
NSCLC_38242124__IMC__87_A2,6 Lung Primary cancer 2,896 Tumor/Malignant 35.6% 1.00 0.03
NSCLC_38242124__IMC__87_A2,7 Lung Primary cancer 3,691 Tumor/Malignant 64.7% 0.95 0.19
NSCLC_38242124__IMC__87_A2,8 Lung Primary cancer 3,504 Tumor/Malignant 34.2% 0.76 0.62
NSCLC_38242124__IMC__87_A2,9 Lung Primary cancer 954 Stromal 39.4% 0.84 0.44
NSCLC_38242124__IMC__87_A3,10 Lung Primary cancer 5,265 Tumor/Malignant 89.3% 1.00 0.02
NSCLC_38242124__IMC__87_A3,11 Lung Primary cancer 2,327 Tumor/Malignant 30.6% 0.96 0.15
NSCLC_38242124__IMC__87_A3,12 Lung Primary cancer 1,884 Tumor/Malignant 73.8% 0.99 0.06
NSCLC_38242124__IMC__87_A3,13 Lung Primary cancer 3,544 Tumor/Malignant 68.7% 0.93 0.21
NSCLC_38242124__IMC__87_A3,14 Lung Primary cancer 3,812 Tumor/Malignant 77.6% 0.97 0.09
NSCLC_38242124__IMC__87_A3,15 Lung Primary cancer 3,996 Tumor/Malignant 80.4% 0.98 0.07
NSCLC_38242124__IMC__87_A3,16 Lung Primary cancer 3,759 Tumor/Malignant 84.3% 0.99 0.06
NSCLC_38242124__IMC__87_A3,17 Lung Primary cancer 1,616 Tumor/Malignant 41.9% 0.75 0.52
NSCLC_38242124__IMC__87_A3,2 Lung Primary cancer 2,387 Tumor/Malignant 58.0% 0.95 0.17
NSCLC_38242124__IMC__87_A3,3 Lung Primary cancer 4,687 Immune 28.1% 0.51 0.84
NSCLC_38242124__IMC__87_A3,4 Lung Primary cancer 2,759 Tumor/Malignant 61.4% 0.97 0.13
NSCLC_38242124__IMC__87_A3,5 Lung Primary cancer 1,518 Stromal 36.7% 0.76 0.57
NSCLC_38242124__IMC__87_A3,6 Lung Primary cancer 2,899 Tumor/Malignant 63.8% 0.96 0.11

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A2,3 Lung Primary cancer 4,628 Tumor/Malignant 24.4% 0.97 0.10
NSCLC_38242124__IMC__87_A2,4 Lung Primary cancer 4,085 Tumor/Malignant 42.1% 0.97 0.16
NSCLC_38242124__IMC__87_A2,5 Lung Primary cancer 3,425 Tumor/Malignant 46.4% 0.97 0.09
NSCLC_38242124__IMC__87_A2,6 Lung Primary cancer 2,896 Tumor/Malignant 50.7% 0.97 0.15
NSCLC_38242124__IMC__87_A2,7 Lung Primary cancer 3,691 Tumor/Malignant 45.1% 0.99 0.06
NSCLC_38242124__IMC__87_A2,8 Lung Primary cancer 3,504 Tumor/Malignant 32.9% 0.74 0.65
NSCLC_38242124__IMC__87_A2,9 Lung Primary cancer 954 Stromal 27.8% 0.68 0.65
NSCLC_38242124__IMC__87_A3,10 Lung Primary cancer 5,265 Tumor/Malignant 89.3% 1.00 0.02
NSCLC_38242124__IMC__87_A3,11 Lung Primary cancer 2,327 Tumor/Malignant 31.3% 0.96 0.16
NSCLC_38242124__IMC__87_A3,12 Lung Primary cancer 1,884 Tumor/Malignant 73.7% 0.99 0.06
NSCLC_38242124__IMC__87_A3,13 Lung Primary cancer 3,544 Tumor/Malignant 44.5% 0.99 0.05
NSCLC_38242124__IMC__87_A3,14 Lung Primary cancer 3,812 Tumor/Malignant 67.1% 1.00 0.03
NSCLC_38242124__IMC__87_A3,15 Lung Primary cancer 3,996 Tumor/Malignant 73.8% 0.99 0.04
NSCLC_38242124__IMC__87_A3,16 Lung Primary cancer 3,759 Tumor/Malignant 77.1% 0.99 0.05
NSCLC_38242124__IMC__87_A3,17 Lung Primary cancer 1,616 Tumor/Malignant 41.6% 0.76 0.53
NSCLC_38242124__IMC__87_A3,2 Lung Primary cancer 2,387 Tumor/Malignant 52.2% 0.97 0.12
NSCLC_38242124__IMC__87_A3,3 Lung Primary cancer 4,687 Stromal 22.3% 0.36 1.05
NSCLC_38242124__IMC__87_A3,4 Lung Primary cancer 2,759 Tumor/Malignant 47.2% 1.00 0.02
NSCLC_38242124__IMC__87_A3,5 Lung Primary cancer 1,518 Stromal 25.7% 0.55 0.79
NSCLC_38242124__IMC__87_A3,6 Lung Primary cancer 2,899 Tumor/Malignant 60.2% 0.98 0.07

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A2,3 Lung Primary cancer 4,628 Tumor/Malignant cell 37.0% 0.89 0.29
NSCLC_38242124__IMC__87_A2,4 Lung Primary cancer 4,085 Tumor/Malignant cell 43.1% 0.96 0.18
NSCLC_38242124__IMC__87_A2,5 Lung Primary cancer 3,425 Tumor/Malignant cell 49.7% 0.96 0.13
NSCLC_38242124__IMC__87_A2,6 Lung Primary cancer 2,896 Tumor/Malignant cell 57.4% 0.94 0.21
NSCLC_38242124__IMC__87_A2,7 Lung Primary cancer 3,691 Tumor/Malignant cell 64.5% 0.95 0.19
NSCLC_38242124__IMC__87_A2,8 Lung Primary cancer 3,504 Tumor/Malignant cell 50.1% 0.93 0.28
NSCLC_38242124__IMC__87_A2,9 Lung Primary cancer 954 Fibroblast 36.8% 0.79 0.54
NSCLC_38242124__IMC__87_A3,10 Lung Primary cancer 5,265 Tumor/Malignant cell 93.0% 0.99 0.03
NSCLC_38242124__IMC__87_A3,11 Lung Primary cancer 2,327 Tumor/Malignant cell 39.4% 0.91 0.28
NSCLC_38242124__IMC__87_A3,12 Lung Primary cancer 1,884 Tumor/Malignant cell 74.5% 0.99 0.06
NSCLC_38242124__IMC__87_A3,13 Lung Primary cancer 3,544 Tumor/Malignant cell 67.8% 0.93 0.20
NSCLC_38242124__IMC__87_A3,14 Lung Primary cancer 3,812 Tumor/Malignant cell 77.7% 0.97 0.09
NSCLC_38242124__IMC__87_A3,15 Lung Primary cancer 3,996 Tumor/Malignant cell 83.4% 0.97 0.09
NSCLC_38242124__IMC__87_A3,16 Lung Primary cancer 3,759 Tumor/Malignant cell 84.2% 0.99 0.06
NSCLC_38242124__IMC__87_A3,17 Lung Primary cancer 1,616 Tumor/Malignant cell 64.2% 0.89 0.27
NSCLC_38242124__IMC__87_A3,2 Lung Primary cancer 2,387 Tumor/Malignant cell 57.4% 0.95 0.17
NSCLC_38242124__IMC__87_A3,3 Lung Primary cancer 4,687 Fibroblast 25.1% 0.53 0.93
NSCLC_38242124__IMC__87_A3,4 Lung Primary cancer 2,759 Tumor/Malignant cell 62.0% 0.97 0.13
NSCLC_38242124__IMC__87_A3,5 Lung Primary cancer 1,518 Fibroblast 32.1% 0.70 0.66
NSCLC_38242124__IMC__87_A3,6 Lung Primary cancer 2,899 Tumor/Malignant cell 64.2% 0.96 0.12