scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A2,3 Lung Primary cancer 4,628 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,4 Lung Primary cancer 4,085 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,5 Lung Primary cancer 3,425 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A2,6 Lung Primary cancer 2,896 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,7 Lung Primary cancer 3,691 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,8 Lung Primary cancer 3,504 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,9 Lung Primary cancer 954 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,10 Lung Primary cancer 5,265 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,11 Lung Primary cancer 2,327 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,12 Lung Primary cancer 1,884 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,13 Lung Primary cancer 3,544 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,14 Lung Primary cancer 3,812 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,15 Lung Primary cancer 3,996 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,16 Lung Primary cancer 3,759 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,17 Lung Primary cancer 1,616 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,2 Lung Primary cancer 2,387 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,3 Lung Primary cancer 4,687 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,4 Lung Primary cancer 2,759 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,5 Lung Primary cancer 1,518 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,6 Lung Primary cancer 2,899 0.37 0.20 Highly modular Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A2,3 Lung Primary cancer 4,628 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,4 Lung Primary cancer 4,085 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,5 Lung Primary cancer 3,425 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A2,6 Lung Primary cancer 2,896 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,7 Lung Primary cancer 3,691 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,8 Lung Primary cancer 3,504 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A2,9 Lung Primary cancer 954 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,10 Lung Primary cancer 5,265 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,11 Lung Primary cancer 2,327 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,12 Lung Primary cancer 1,884 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,13 Lung Primary cancer 3,544 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,14 Lung Primary cancer 3,812 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,15 Lung Primary cancer 3,996 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,16 Lung Primary cancer 3,759 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,17 Lung Primary cancer 1,616 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,2 Lung Primary cancer 2,387 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,3 Lung Primary cancer 4,687 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,4 Lung Primary cancer 2,759 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,5 Lung Primary cancer 1,518 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A3,6 Lung Primary cancer 2,899 0.37 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A2,3 Lung Primary cancer 4,628 0.35 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A2,4 Lung Primary cancer 4,085 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,5 Lung Primary cancer 3,425 0.40 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A2,6 Lung Primary cancer 2,896 0.23 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,7 Lung Primary cancer 3,691 0.17 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,8 Lung Primary cancer 3,504 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A2,9 Lung Primary cancer 954 0.16 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,10 Lung Primary cancer 5,265 0.05 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A3,11 Lung Primary cancer 2,327 0.35 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,12 Lung Primary cancer 1,884 0.22 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,13 Lung Primary cancer 3,544 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,14 Lung Primary cancer 3,812 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,15 Lung Primary cancer 3,996 0.11 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A3,16 Lung Primary cancer 3,759 0.08 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A3,17 Lung Primary cancer 1,616 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,2 Lung Primary cancer 2,387 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,3 Lung Primary cancer 4,687 0.29 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,4 Lung Primary cancer 2,759 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,5 Lung Primary cancer 1,518 0.13 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A3,6 Lung Primary cancer 2,899 0.37 0.10 Highly modular Weakly segregated