scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A3,7 Lung Primary cancer 3,205 Tumor/Malignant 73.8% 0.98 0.10
NSCLC_38242124__IMC__87_A3,8 Lung Primary cancer 3,915 Tumor/Malignant 57.4% 1.00 0.04
NSCLC_38242124__IMC__87_A3,9 Lung Primary cancer 4,014 Tumor/Malignant 64.8% 0.99 0.06
NSCLC_38242124__IMC__87_A4,1 Lung Primary cancer 3,759 Tumor/Malignant 40.6% 0.96 0.14
NSCLC_38242124__IMC__87_A4,10 Lung Primary cancer 3,820 Other 35.8% 0.39 1.04
NSCLC_38242124__IMC__87_A4,12 Lung Primary cancer 3,390 Tumor/Malignant 64.5% 0.98 0.10
NSCLC_38242124__IMC__87_A4,13 Lung Primary cancer 2,653 Stromal 36.6% 0.46 0.90
NSCLC_38242124__IMC__87_A4,14 Lung Primary cancer 3,605 Tumor/Malignant 80.9% 0.98 0.06
NSCLC_38242124__IMC__87_A4,15 Lung Primary cancer 4,673 Tumor/Malignant 44.6% 0.99 0.05
NSCLC_38242124__IMC__87_A4,16 Lung Primary cancer 3,849 Tumor/Malignant 70.2% 0.97 0.10
NSCLC_38242124__IMC__87_A4,17 Lung Primary cancer 3,131 Tumor/Malignant 37.6% 0.97 0.15
NSCLC_38242124__IMC__87_A4,2 Lung Primary cancer 4,091 Stromal 26.7% 0.64 0.67
NSCLC_38242124__IMC__87_A4,3 Lung Primary cancer 3,174 Stromal 34.5% 0.52 0.91
NSCLC_38242124__IMC__87_A4,4 Lung Primary cancer 2,901 Tumor/Malignant 58.4% 0.97 0.12
NSCLC_38242124__IMC__87_A4,5 Lung Primary cancer 2,110 Stromal 35.9% 0.32 1.04
NSCLC_38242124__IMC__87_A4,6 Lung Primary cancer 2,883 Tumor/Malignant 38.3% 0.95 0.19
NSCLC_38242124__IMC__87_A4,7 Lung Primary cancer 3,672 Tumor/Malignant 37.3% 0.69 0.65
NSCLC_38242124__IMC__87_A4,8 Lung Primary cancer 3,946 Immune 34.2% 0.92 0.21
NSCLC_38242124__IMC__87_A4,9 Lung Primary cancer 2,785 Tumor/Malignant 60.3% 0.98 0.08
NSCLC_38242124__IMC__87_A5,1 Lung Primary cancer 3,432 Immune 35.5% 0.87 0.40

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A3,7 Lung Primary cancer 3,205 Tumor/Malignant 68.3% 0.99 0.07
NSCLC_38242124__IMC__87_A3,8 Lung Primary cancer 3,915 Tumor/Malignant 57.3% 1.00 0.04
NSCLC_38242124__IMC__87_A3,9 Lung Primary cancer 4,014 Tumor/Malignant 70.5% 0.99 0.05
NSCLC_38242124__IMC__87_A4,1 Lung Primary cancer 3,759 Tumor/Malignant 38.2% 0.97 0.11
NSCLC_38242124__IMC__87_A4,10 Lung Primary cancer 3,820 Other 32.9% 0.38 1.04
NSCLC_38242124__IMC__87_A4,12 Lung Primary cancer 3,390 Tumor/Malignant 62.2% 0.98 0.08
NSCLC_38242124__IMC__87_A4,13 Lung Primary cancer 2,653 Stromal 28.5% 0.50 0.93
NSCLC_38242124__IMC__87_A4,14 Lung Primary cancer 3,605 Tumor/Malignant 76.4% 1.00 0.03
NSCLC_38242124__IMC__87_A4,15 Lung Primary cancer 4,673 Tumor/Malignant 44.5% 1.00 0.05
NSCLC_38242124__IMC__87_A4,16 Lung Primary cancer 3,849 Tumor/Malignant 64.5% 0.98 0.06
NSCLC_38242124__IMC__87_A4,17 Lung Primary cancer 3,131 Tumor/Malignant 38.6% 0.97 0.16
NSCLC_38242124__IMC__87_A4,2 Lung Primary cancer 4,091 Lymphoid 21.6% 0.77 0.60
NSCLC_38242124__IMC__87_A4,3 Lung Primary cancer 3,174 Stromal 29.7% 0.81 0.51
NSCLC_38242124__IMC__87_A4,4 Lung Primary cancer 2,901 Tumor/Malignant 46.9% 1.00 0.04
NSCLC_38242124__IMC__87_A4,5 Lung Primary cancer 2,110 Stromal 33.5% 0.33 1.04
NSCLC_38242124__IMC__87_A4,6 Lung Primary cancer 2,883 Tumor/Malignant 37.9% 0.95 0.18
NSCLC_38242124__IMC__87_A4,7 Lung Primary cancer 3,672 Tumor/Malignant 30.4% 0.75 0.59
NSCLC_38242124__IMC__87_A4,8 Lung Primary cancer 3,946 Lymphoid 30.3% 0.91 0.26
NSCLC_38242124__IMC__87_A4,9 Lung Primary cancer 2,785 Tumor/Malignant 60.0% 0.99 0.08
NSCLC_38242124__IMC__87_A5,1 Lung Primary cancer 3,432 Lymphoid 28.6% 0.84 0.48

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A3,7 Lung Primary cancer 3,205 Tumor/Malignant cell 74.0% 0.98 0.10
NSCLC_38242124__IMC__87_A3,8 Lung Primary cancer 3,915 Tumor/Malignant cell 76.0% 0.95 0.15
NSCLC_38242124__IMC__87_A3,9 Lung Primary cancer 4,014 Tumor/Malignant cell 76.2% 0.98 0.06
NSCLC_38242124__IMC__87_A4,1 Lung Primary cancer 3,759 Tumor/Malignant cell 40.9% 0.96 0.15
NSCLC_38242124__IMC__87_A4,10 Lung Primary cancer 3,820 Fibroblast 33.1% 0.54 0.92
NSCLC_38242124__IMC__87_A4,12 Lung Primary cancer 3,390 Tumor/Malignant cell 64.8% 0.97 0.11
NSCLC_38242124__IMC__87_A4,13 Lung Primary cancer 2,653 Fibroblast 37.9% 0.72 0.64
NSCLC_38242124__IMC__87_A4,14 Lung Primary cancer 3,605 Tumor/Malignant cell 81.3% 0.98 0.06
NSCLC_38242124__IMC__87_A4,15 Lung Primary cancer 4,673 Tumor/Malignant cell 64.0% 0.95 0.20
NSCLC_38242124__IMC__87_A4,16 Lung Primary cancer 3,849 Tumor/Malignant cell 69.4% 0.97 0.09
NSCLC_38242124__IMC__87_A4,17 Lung Primary cancer 3,131 Tumor/Malignant cell 45.3% 0.94 0.24
NSCLC_38242124__IMC__87_A4,2 Lung Primary cancer 4,091 B cell 26.4% 0.46 1.01
NSCLC_38242124__IMC__87_A4,3 Lung Primary cancer 3,174 Fibroblast 25.0% 0.31 1.16
NSCLC_38242124__IMC__87_A4,4 Lung Primary cancer 2,901 Tumor/Malignant cell 58.3% 0.97 0.13
NSCLC_38242124__IMC__87_A4,5 Lung Primary cancer 2,110 Fibroblast 29.3% 0.50 0.85
NSCLC_38242124__IMC__87_A4,6 Lung Primary cancer 2,883 Tumor/Malignant cell 47.2% 0.93 0.28
NSCLC_38242124__IMC__87_A4,7 Lung Primary cancer 3,672 Tumor/Malignant cell 49.9% 0.92 0.31
NSCLC_38242124__IMC__87_A4,8 Lung Primary cancer 3,946 T cell 33.4% 0.47 0.77
NSCLC_38242124__IMC__87_A4,9 Lung Primary cancer 2,785 Tumor/Malignant cell 60.3% 0.99 0.08
NSCLC_38242124__IMC__87_A5,1 Lung Primary cancer 3,432 T cell 37.4% 0.41 0.96