scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A3,7 Lung Primary cancer 3,205 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,8 Lung Primary cancer 3,915 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,9 Lung Primary cancer 4,014 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,1 Lung Primary cancer 3,759 0.44 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A4,10 Lung Primary cancer 3,820 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A4,12 Lung Primary cancer 3,390 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A4,13 Lung Primary cancer 2,653 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,14 Lung Primary cancer 3,605 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A4,15 Lung Primary cancer 4,673 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,16 Lung Primary cancer 3,849 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,17 Lung Primary cancer 3,131 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,2 Lung Primary cancer 4,091 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,3 Lung Primary cancer 3,174 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,4 Lung Primary cancer 2,901 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,5 Lung Primary cancer 2,110 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,6 Lung Primary cancer 2,883 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,7 Lung Primary cancer 3,672 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,8 Lung Primary cancer 3,946 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,9 Lung Primary cancer 2,785 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A5,1 Lung Primary cancer 3,432 0.19 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A3,7 Lung Primary cancer 3,205 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,8 Lung Primary cancer 3,915 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A3,9 Lung Primary cancer 4,014 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,1 Lung Primary cancer 3,759 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A4,10 Lung Primary cancer 3,820 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A4,12 Lung Primary cancer 3,390 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A4,13 Lung Primary cancer 2,653 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,14 Lung Primary cancer 3,605 0.14 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A4,15 Lung Primary cancer 4,673 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,16 Lung Primary cancer 3,849 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,17 Lung Primary cancer 3,131 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,2 Lung Primary cancer 4,091 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,3 Lung Primary cancer 3,174 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,4 Lung Primary cancer 2,901 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,5 Lung Primary cancer 2,110 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,6 Lung Primary cancer 2,883 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,7 Lung Primary cancer 3,672 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,8 Lung Primary cancer 3,946 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A4,9 Lung Primary cancer 2,785 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A5,1 Lung Primary cancer 3,432 0.21 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A3,7 Lung Primary cancer 3,205 0.16 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,8 Lung Primary cancer 3,915 0.27 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A3,9 Lung Primary cancer 4,014 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,1 Lung Primary cancer 3,759 0.44 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A4,10 Lung Primary cancer 3,820 0.11 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A4,12 Lung Primary cancer 3,390 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A4,13 Lung Primary cancer 2,653 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,14 Lung Primary cancer 3,605 0.14 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A4,15 Lung Primary cancer 4,673 0.26 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,16 Lung Primary cancer 3,849 0.23 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,17 Lung Primary cancer 3,131 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,2 Lung Primary cancer 4,091 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,3 Lung Primary cancer 3,174 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,4 Lung Primary cancer 2,901 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,5 Lung Primary cancer 2,110 0.20 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,6 Lung Primary cancer 2,883 0.31 0.16 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A4,7 Lung Primary cancer 3,672 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A4,8 Lung Primary cancer 3,946 0.41 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A4,9 Lung Primary cancer 2,785 0.06 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A5,1 Lung Primary cancer 3,432 0.21 0.11 Weakly structured Weakly segregated