scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A5,10 Lung Primary cancer 2,915 Immune 29.2% 0.48 0.91
NSCLC_38242124__IMC__87_A5,11 Lung Primary cancer 3,801 Tumor/Malignant 65.4% 0.99 0.03
NSCLC_38242124__IMC__87_A5,12 Lung Primary cancer 2,769 Tumor/Malignant 46.7% 0.53 0.62
NSCLC_38242124__IMC__87_A5,13 Lung Primary cancer 2,631 Tumor/Malignant 50.4% 0.85 0.35
NSCLC_38242124__IMC__87_A5,14 Lung Primary cancer 4,056 Tumor/Malignant 54.2% 0.96 0.15
NSCLC_38242124__IMC__87_A5,15 Lung Primary cancer 3,163 Tumor/Malignant 75.3% 1.00 0.02
NSCLC_38242124__IMC__87_A5,17 Lung Primary cancer 2,997 Tumor/Malignant 66.8% 0.95 0.19
NSCLC_38242124__IMC__87_A5,2 Lung Primary cancer 3,481 Tumor/Malignant 36.7% 0.96 0.16
NSCLC_38242124__IMC__87_A5,3 Lung Primary cancer 4,725 Tumor/Malignant 73.7% 0.96 0.11
NSCLC_38242124__IMC__87_A5,4 Lung Primary cancer 4,541 Tumor/Malignant 38.1% 0.98 0.06
NSCLC_38242124__IMC__87_A5,5 Lung Primary cancer 3,517 Stromal 32.7% 0.90 0.32
NSCLC_38242124__IMC__87_A5,6 Lung Primary cancer 1,553 Immune 50.9% 0.94 0.18
NSCLC_38242124__IMC__87_A5,7 Lung Primary cancer 3,762 Immune 31.5% 0.53 0.82
NSCLC_38242124__IMC__87_A5,8 Lung Primary cancer 2,195 Tumor/Malignant 44.0% 0.96 0.15
NSCLC_38242124__IMC__87_A5,9 Lung Primary cancer 3,263 Tumor/Malignant 78.9% 0.99 0.04
NSCLC_38242124__IMC__87_A6,1 Lung Primary cancer 2,984 Tumor/Malignant 30.0% 0.95 0.20
NSCLC_38242124__IMC__87_A6,10 Lung Primary cancer 5,254 Immune 97.8% 1.00 0.01
NSCLC_38242124__IMC__87_A6,11 Lung Primary cancer 2,164 Tumor/Malignant 49.3% 0.96 0.14
NSCLC_38242124__IMC__87_A6,12 Lung Primary cancer 2,132 Stromal 45.0% 0.89 0.29
NSCLC_38242124__IMC__87_A6,13 Lung Primary cancer 763 Stromal 48.1% 0.29 1.05

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A5,10 Lung Primary cancer 2,915 Tumor/Malignant 23.0% 0.67 0.81
NSCLC_38242124__IMC__87_A5,11 Lung Primary cancer 3,801 Tumor/Malignant 71.7% 0.98 0.07
NSCLC_38242124__IMC__87_A5,12 Lung Primary cancer 2,769 Tumor/Malignant 45.2% 0.54 0.63
NSCLC_38242124__IMC__87_A5,13 Lung Primary cancer 2,631 Tumor/Malignant 44.1% 0.89 0.30
NSCLC_38242124__IMC__87_A5,14 Lung Primary cancer 4,056 Tumor/Malignant 50.9% 0.97 0.15
NSCLC_38242124__IMC__87_A5,15 Lung Primary cancer 3,163 Tumor/Malignant 76.8% 0.99 0.03
NSCLC_38242124__IMC__87_A5,17 Lung Primary cancer 2,997 Tumor/Malignant 43.8% 1.00 0.04
NSCLC_38242124__IMC__87_A5,2 Lung Primary cancer 3,481 Tumor/Malignant 34.4% 0.97 0.12
NSCLC_38242124__IMC__87_A5,3 Lung Primary cancer 4,725 Tumor/Malignant 60.6% 0.99 0.04
NSCLC_38242124__IMC__87_A5,4 Lung Primary cancer 4,541 Tumor/Malignant 38.3% 0.98 0.06
NSCLC_38242124__IMC__87_A5,5 Lung Primary cancer 3,517 Stromal 26.2% 0.92 0.26
NSCLC_38242124__IMC__87_A5,6 Lung Primary cancer 1,553 Myeloid 36.1% 0.99 0.06
NSCLC_38242124__IMC__87_A5,7 Lung Primary cancer 3,762 Lymphoid 23.7% 0.35 1.02
NSCLC_38242124__IMC__87_A5,8 Lung Primary cancer 2,195 Tumor/Malignant 33.2% 0.99 0.03
NSCLC_38242124__IMC__87_A5,9 Lung Primary cancer 3,263 Tumor/Malignant 80.0% 0.99 0.04
NSCLC_38242124__IMC__87_A6,1 Lung Primary cancer 2,984 Tumor/Malignant 30.2% 0.95 0.20
NSCLC_38242124__IMC__87_A6,10 Lung Primary cancer 5,254 Myeloid 97.3% 1.00 0.01
NSCLC_38242124__IMC__87_A6,11 Lung Primary cancer 2,164 Tumor/Malignant 43.8% 0.98 0.08
NSCLC_38242124__IMC__87_A6,12 Lung Primary cancer 2,132 Stromal 40.8% 0.91 0.26
NSCLC_38242124__IMC__87_A6,13 Lung Primary cancer 763 Stromal 35.6% 0.32 1.09

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A5,10 Lung Primary cancer 2,915 Tumor/Malignant cell 25.6% 0.65 0.88
NSCLC_38242124__IMC__87_A5,11 Lung Primary cancer 3,801 Tumor/Malignant cell 77.6% 0.97 0.11
NSCLC_38242124__IMC__87_A5,12 Lung Primary cancer 2,769 Tumor/Malignant cell 54.1% 0.84 0.42
NSCLC_38242124__IMC__87_A5,13 Lung Primary cancer 2,631 Tumor/Malignant cell 51.6% 0.85 0.38
NSCLC_38242124__IMC__87_A5,14 Lung Primary cancer 4,056 Tumor/Malignant cell 49.0% 0.97 0.13
NSCLC_38242124__IMC__87_A5,15 Lung Primary cancer 3,163 Tumor/Malignant cell 85.3% 0.97 0.08
NSCLC_38242124__IMC__87_A5,17 Lung Primary cancer 2,997 Tumor/Malignant cell 67.2% 0.94 0.20
NSCLC_38242124__IMC__87_A5,2 Lung Primary cancer 3,481 Tumor/Malignant cell 37.8% 0.94 0.19
NSCLC_38242124__IMC__87_A5,3 Lung Primary cancer 4,725 Tumor/Malignant cell 74.2% 0.96 0.12
NSCLC_38242124__IMC__87_A5,4 Lung Primary cancer 4,541 Tumor/Malignant cell 38.3% 0.98 0.06
NSCLC_38242124__IMC__87_A5,5 Lung Primary cancer 3,517 Fibroblast 32.0% 0.87 0.35
NSCLC_38242124__IMC__87_A5,6 Lung Primary cancer 1,553 Myeloid cell, unspecified 50.4% 0.93 0.21
NSCLC_38242124__IMC__87_A5,7 Lung Primary cancer 3,762 Fibroblast 26.2% 0.69 0.65
NSCLC_38242124__IMC__87_A5,8 Lung Primary cancer 2,195 Tumor/Malignant cell 44.6% 0.95 0.16
NSCLC_38242124__IMC__87_A5,9 Lung Primary cancer 3,263 Tumor/Malignant cell 86.7% 0.97 0.08
NSCLC_38242124__IMC__87_A6,1 Lung Primary cancer 2,984 Tumor/Malignant cell 39.9% 0.91 0.33
NSCLC_38242124__IMC__87_A6,10 Lung Primary cancer 5,254 Granulocyte 97.7% 1.00 0.01
NSCLC_38242124__IMC__87_A6,11 Lung Primary cancer 2,164 Tumor/Malignant cell 49.2% 0.96 0.14
NSCLC_38242124__IMC__87_A6,12 Lung Primary cancer 2,132 Fibroblast 46.9% 0.84 0.39
NSCLC_38242124__IMC__87_A6,13 Lung Primary cancer 763 Other 35.9% 0.43 1.01