scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A5,10 Lung Primary cancer 2,915 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,11 Lung Primary cancer 3,801 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,12 Lung Primary cancer 2,769 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,13 Lung Primary cancer 2,631 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,14 Lung Primary cancer 4,056 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A5,15 Lung Primary cancer 3,163 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,17 Lung Primary cancer 2,997 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,2 Lung Primary cancer 3,481 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,3 Lung Primary cancer 4,725 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,4 Lung Primary cancer 4,541 0.45 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A5,5 Lung Primary cancer 3,517 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A5,6 Lung Primary cancer 1,553 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,7 Lung Primary cancer 3,762 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,8 Lung Primary cancer 2,195 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,9 Lung Primary cancer 3,263 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A6,1 Lung Primary cancer 2,984 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,10 Lung Primary cancer 5,254 0.01 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A6,11 Lung Primary cancer 2,164 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,12 Lung Primary cancer 2,132 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,13 Lung Primary cancer 763 0.11 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A5,10 Lung Primary cancer 2,915 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,11 Lung Primary cancer 3,801 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,12 Lung Primary cancer 2,769 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,13 Lung Primary cancer 2,631 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,14 Lung Primary cancer 4,056 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A5,15 Lung Primary cancer 3,163 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,17 Lung Primary cancer 2,997 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,2 Lung Primary cancer 3,481 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,3 Lung Primary cancer 4,725 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,4 Lung Primary cancer 4,541 0.45 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A5,5 Lung Primary cancer 3,517 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A5,6 Lung Primary cancer 1,553 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,7 Lung Primary cancer 3,762 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,8 Lung Primary cancer 2,195 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A5,9 Lung Primary cancer 3,263 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A6,1 Lung Primary cancer 2,984 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,10 Lung Primary cancer 5,254 0.01 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A6,11 Lung Primary cancer 2,164 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,12 Lung Primary cancer 2,132 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,13 Lung Primary cancer 763 0.11 0.17 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A5,10 Lung Primary cancer 2,915 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,11 Lung Primary cancer 3,801 0.17 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,12 Lung Primary cancer 2,769 0.16 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,13 Lung Primary cancer 2,631 0.22 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,14 Lung Primary cancer 4,056 0.09 0.07 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A5,15 Lung Primary cancer 3,163 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,17 Lung Primary cancer 2,997 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,2 Lung Primary cancer 3,481 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,3 Lung Primary cancer 4,725 0.18 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,4 Lung Primary cancer 4,541 0.45 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A5,5 Lung Primary cancer 3,517 0.42 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A5,6 Lung Primary cancer 1,553 0.32 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,7 Lung Primary cancer 3,762 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,8 Lung Primary cancer 2,195 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A5,9 Lung Primary cancer 3,263 0.11 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A6,1 Lung Primary cancer 2,984 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,10 Lung Primary cancer 5,254 0.01 0.05 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A6,11 Lung Primary cancer 2,164 0.35 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,12 Lung Primary cancer 2,132 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,13 Lung Primary cancer 763 0.12 0.07 Homogeneous Weakly segregated