scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A6,14 Lung Primary cancer 3,661 Tumor/Malignant 67.1% 0.98 0.11
NSCLC_38242124__IMC__87_A6,15 Lung Primary cancer 2,857 Tumor/Malignant 67.9% 0.97 0.09
NSCLC_38242124__IMC__87_A6,17 Lung Primary cancer 2,087 Tumor/Malignant 39.7% 0.73 0.63
NSCLC_38242124__IMC__87_A6,2 Lung Primary cancer 3,826 Stromal 38.7% 0.38 1.02
NSCLC_38242124__IMC__87_A6,3 Lung Primary cancer 790 Stromal 34.7% 0.49 0.83
NSCLC_38242124__IMC__87_A6,4 Lung Primary cancer 3,966 Tumor/Malignant 47.3% 0.99 0.05
NSCLC_38242124__IMC__87_A6,5 Lung Primary cancer 3,071 Stromal 27.2% 0.87 0.39
NSCLC_38242124__IMC__87_A6,6 Lung Primary cancer 951 Stromal 37.7% 0.87 0.37
NSCLC_38242124__IMC__87_A6,7 Lung Primary cancer 2,781 Immune 30.0% 0.87 0.36
NSCLC_38242124__IMC__87_A6,8 Lung Primary cancer 2,315 Stromal 32.7% 0.76 0.62
NSCLC_38242124__IMC__87_A6,9 Lung Primary cancer 1,937 Tumor/Malignant 93.5% 0.98 0.04
NSCLC_38242124__IMC__87_A7,10 Lung Primary cancer 2,605 Tumor/Malignant 87.0% 0.97 0.07
NSCLC_38242124__IMC__87_A7,12 Lung Primary cancer 4,758 Tumor/Malignant 43.0% 0.96 0.12
NSCLC_38242124__IMC__87_A7,13 Lung Primary cancer 4,151 Immune 54.9% 0.91 0.25
NSCLC_38242124__IMC__87_A7,14 Lung Primary cancer 3,253 Tumor/Malignant 65.5% 0.97 0.13
NSCLC_38242124__IMC__87_A7,15 Lung Primary cancer 2,902 Tumor/Malignant 46.1% 0.95 0.16
NSCLC_38242124__IMC__87_A7,16 Lung Primary cancer 3,737 Tumor/Malignant 34.9% 0.98 0.08
NSCLC_38242124__IMC__87_A7,17 Lung Primary cancer 3,487 Tumor/Malignant 67.2% 0.97 0.12
NSCLC_38242124__IMC__87_A7,2 Lung Primary cancer 3,451 Tumor/Malignant 48.7% 0.96 0.17
NSCLC_38242124__IMC__87_A7,3 Lung Primary cancer 1,637 Tumor/Malignant 49.2% 0.93 0.23

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A6,14 Lung Primary cancer 3,661 Tumor/Malignant 57.5% 0.99 0.05
NSCLC_38242124__IMC__87_A6,15 Lung Primary cancer 2,857 Tumor/Malignant 60.4% 1.00 0.03
NSCLC_38242124__IMC__87_A6,17 Lung Primary cancer 2,087 Tumor/Malignant 44.2% 0.95 0.21
NSCLC_38242124__IMC__87_A6,2 Lung Primary cancer 3,826 Stromal 31.2% 0.39 1.09
NSCLC_38242124__IMC__87_A6,3 Lung Primary cancer 790 Stromal 30.1% 0.55 0.86
NSCLC_38242124__IMC__87_A6,4 Lung Primary cancer 3,966 Tumor/Malignant 49.8% 0.98 0.07
NSCLC_38242124__IMC__87_A6,5 Lung Primary cancer 3,071 Stromal 28.9% 0.85 0.43
NSCLC_38242124__IMC__87_A6,6 Lung Primary cancer 951 Stromal 40.3% 0.85 0.39
NSCLC_38242124__IMC__87_A6,7 Lung Primary cancer 2,781 Lymphoid 24.8% 0.75 0.62
NSCLC_38242124__IMC__87_A6,8 Lung Primary cancer 2,315 Stromal 31.0% 0.76 0.61
NSCLC_38242124__IMC__87_A6,9 Lung Primary cancer 1,937 Tumor/Malignant 68.5% 0.99 0.02
NSCLC_38242124__IMC__87_A7,10 Lung Primary cancer 2,605 Tumor/Malignant 77.6% 1.00 0.02
NSCLC_38242124__IMC__87_A7,12 Lung Primary cancer 4,758 Tumor/Malignant 42.5% 0.96 0.12
NSCLC_38242124__IMC__87_A7,13 Lung Primary cancer 4,151 Lymphoid 35.7% 0.76 0.60
NSCLC_38242124__IMC__87_A7,14 Lung Primary cancer 3,253 Tumor/Malignant 53.5% 0.99 0.05
NSCLC_38242124__IMC__87_A7,15 Lung Primary cancer 2,902 Tumor/Malignant 45.5% 0.96 0.15
NSCLC_38242124__IMC__87_A7,16 Lung Primary cancer 3,737 Tumor/Malignant 35.3% 0.98 0.08
NSCLC_38242124__IMC__87_A7,17 Lung Primary cancer 3,487 Tumor/Malignant 52.8% 0.97 0.10
NSCLC_38242124__IMC__87_A7,2 Lung Primary cancer 3,451 Tumor/Malignant 43.3% 0.98 0.13
NSCLC_38242124__IMC__87_A7,3 Lung Primary cancer 1,637 Tumor/Malignant 46.7% 0.93 0.21

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A6,14 Lung Primary cancer 3,661 Tumor/Malignant cell 67.8% 0.97 0.12
NSCLC_38242124__IMC__87_A6,15 Lung Primary cancer 2,857 Tumor/Malignant cell 68.1% 0.97 0.09
NSCLC_38242124__IMC__87_A6,17 Lung Primary cancer 2,087 Tumor/Malignant cell 56.9% 0.90 0.32
NSCLC_38242124__IMC__87_A6,2 Lung Primary cancer 3,826 Fibroblast 34.4% 0.63 0.88
NSCLC_38242124__IMC__87_A6,3 Lung Primary cancer 790 Fibroblast 35.6% 0.68 0.61
NSCLC_38242124__IMC__87_A6,4 Lung Primary cancer 3,966 Tumor/Malignant cell 54.5% 0.96 0.13
NSCLC_38242124__IMC__87_A6,5 Lung Primary cancer 3,071 Fibroblast 40.0% 0.77 0.56
NSCLC_38242124__IMC__87_A6,6 Lung Primary cancer 951 Fibroblast 36.9% 0.85 0.42
NSCLC_38242124__IMC__87_A6,7 Lung Primary cancer 2,781 T cell 30.9% 0.70 0.71
NSCLC_38242124__IMC__87_A6,8 Lung Primary cancer 2,315 Fibroblast 28.9% 0.71 0.72
NSCLC_38242124__IMC__87_A6,9 Lung Primary cancer 1,937 Tumor/Malignant cell 93.5% 0.98 0.04
NSCLC_38242124__IMC__87_A7,10 Lung Primary cancer 2,605 Tumor/Malignant cell 77.9% 1.00 0.02
NSCLC_38242124__IMC__87_A7,12 Lung Primary cancer 4,758 Tumor/Malignant cell 43.8% 0.95 0.15
NSCLC_38242124__IMC__87_A7,13 Lung Primary cancer 4,151 T cell 30.4% 0.46 0.94
NSCLC_38242124__IMC__87_A7,14 Lung Primary cancer 3,253 Tumor/Malignant cell 65.6% 0.97 0.14
NSCLC_38242124__IMC__87_A7,15 Lung Primary cancer 2,902 Tumor/Malignant cell 45.0% 0.96 0.15
NSCLC_38242124__IMC__87_A7,16 Lung Primary cancer 3,737 Tumor/Malignant cell 35.3% 0.98 0.09
NSCLC_38242124__IMC__87_A7,17 Lung Primary cancer 3,487 Tumor/Malignant cell 66.4% 0.97 0.12
NSCLC_38242124__IMC__87_A7,2 Lung Primary cancer 3,451 Tumor/Malignant cell 48.7% 0.97 0.17
NSCLC_38242124__IMC__87_A7,3 Lung Primary cancer 1,637 Tumor/Malignant cell 48.6% 0.92 0.23