scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A6,14 Lung Primary cancer 3,661 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,15 Lung Primary cancer 2,857 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,17 Lung Primary cancer 2,087 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,2 Lung Primary cancer 3,826 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A6,3 Lung Primary cancer 790 0.22 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,4 Lung Primary cancer 3,966 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A6,5 Lung Primary cancer 3,071 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,6 Lung Primary cancer 951 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A6,7 Lung Primary cancer 2,781 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,8 Lung Primary cancer 2,315 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A6,9 Lung Primary cancer 1,937 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A7,10 Lung Primary cancer 2,605 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A7,12 Lung Primary cancer 4,758 0.43 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A7,13 Lung Primary cancer 4,151 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A7,14 Lung Primary cancer 3,253 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,15 Lung Primary cancer 2,902 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A7,16 Lung Primary cancer 3,737 0.46 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A7,17 Lung Primary cancer 3,487 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,2 Lung Primary cancer 3,451 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,3 Lung Primary cancer 1,637 0.22 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A6,14 Lung Primary cancer 3,661 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,15 Lung Primary cancer 2,857 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,17 Lung Primary cancer 2,087 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,2 Lung Primary cancer 3,826 0.15 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,3 Lung Primary cancer 790 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,4 Lung Primary cancer 3,966 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A6,5 Lung Primary cancer 3,071 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,6 Lung Primary cancer 951 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A6,7 Lung Primary cancer 2,781 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A6,8 Lung Primary cancer 2,315 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A6,9 Lung Primary cancer 1,937 0.07 0.03 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A7,10 Lung Primary cancer 2,605 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A7,12 Lung Primary cancer 4,758 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A7,13 Lung Primary cancer 4,151 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A7,14 Lung Primary cancer 3,253 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,15 Lung Primary cancer 2,902 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A7,16 Lung Primary cancer 3,737 0.46 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A7,17 Lung Primary cancer 3,487 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,2 Lung Primary cancer 3,451 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,3 Lung Primary cancer 1,637 0.22 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A6,14 Lung Primary cancer 3,661 0.15 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,15 Lung Primary cancer 2,857 0.28 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,17 Lung Primary cancer 2,087 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,2 Lung Primary cancer 3,826 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,3 Lung Primary cancer 790 0.25 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,4 Lung Primary cancer 3,966 0.39 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A6,5 Lung Primary cancer 3,071 0.35 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A6,6 Lung Primary cancer 951 0.11 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A6,7 Lung Primary cancer 2,781 0.20 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,8 Lung Primary cancer 2,315 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A6,9 Lung Primary cancer 1,937 0.07 0.03 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A7,10 Lung Primary cancer 2,605 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A7,12 Lung Primary cancer 4,758 0.43 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A7,13 Lung Primary cancer 4,151 0.14 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A7,14 Lung Primary cancer 3,253 0.18 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A7,15 Lung Primary cancer 2,902 0.40 0.14 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A7,16 Lung Primary cancer 3,737 0.46 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A7,17 Lung Primary cancer 3,487 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A7,2 Lung Primary cancer 3,451 0.26 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A7,3 Lung Primary cancer 1,637 0.23 0.13 Weakly structured Weakly segregated