scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A7,4 Lung Primary cancer 3,806 Tumor/Malignant 50.0% 0.95 0.14
NSCLC_38242124__IMC__87_A7,5 Lung Primary cancer 2,094 Tumor/Malignant 34.2% 0.93 0.34
NSCLC_38242124__IMC__87_A7,6 Lung Primary cancer 2,595 Tumor/Malignant 25.6% 0.50 0.92
NSCLC_38242124__IMC__87_A7,7 Lung Primary cancer 3,480 Tumor/Malignant 31.0% 0.88 0.36
NSCLC_38242124__IMC__87_A7,8 Lung Primary cancer 3,340 Tumor/Malignant 44.9% 0.93 0.27
NSCLC_38242124__IMC__87_A7,9 Lung Primary cancer 2,881 Tumor/Malignant 39.6% 1.00 0.02
NSCLC_38242124__IMC__87_A8,10 Lung Primary cancer 5,468 Tumor/Malignant 96.8% 1.00 0.00
NSCLC_38242124__IMC__87_A8,11 Lung Primary cancer 359 Tumor/Malignant 67.7% 0.86 0.31
NSCLC_38242124__IMC__87_A8,12 Lung Primary cancer 4,213 Tumor/Malignant 71.2% 0.99 0.06
NSCLC_38242124__IMC__87_A8,13 Lung Primary cancer 5,888 Immune 40.8% 0.94 0.20
NSCLC_38242124__IMC__87_A8,14 Lung Primary cancer 2,819 Tumor/Malignant 34.9% 0.98 0.15
NSCLC_38242124__IMC__87_A8,15 Lung Primary cancer 2,151 Stromal 40.3% 0.89 0.34
NSCLC_38242124__IMC__87_A8,16 Lung Primary cancer 1,026 Stromal 34.0% 0.48 0.79
NSCLC_38242124__IMC__87_A8,17 Lung Primary cancer 2,464 Tumor/Malignant 64.4% 0.95 0.13
NSCLC_38242124__IMC__87_A8,2 Lung Primary cancer 3,633 Tumor/Malignant 30.6% 0.97 0.18
NSCLC_38242124__IMC__87_A8,3 Lung Primary cancer 3,330 Tumor/Malignant 46.0% 0.95 0.21
NSCLC_38242124__IMC__87_A8,4 Lung Primary cancer 3,352 Tumor/Malignant 33.4% 0.96 0.15
NSCLC_38242124__IMC__87_A8,5 Lung Primary cancer 3,203 Tumor/Malignant 56.5% 0.96 0.18
NSCLC_38242124__IMC__87_A8,6 Lung Primary cancer 3,005 Tumor/Malignant 39.1% 1.00 0.05
NSCLC_38242124__IMC__87_A8,7 Lung Primary cancer 3,097 Tumor/Malignant 26.7% 0.58 0.76

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A7,4 Lung Primary cancer 3,806 Tumor/Malignant 48.5% 0.95 0.13
NSCLC_38242124__IMC__87_A7,5 Lung Primary cancer 2,094 Tumor/Malignant 28.8% 0.96 0.25
NSCLC_38242124__IMC__87_A7,6 Lung Primary cancer 2,595 Tumor/Malignant 23.0% 0.51 0.92
NSCLC_38242124__IMC__87_A7,7 Lung Primary cancer 3,480 Tumor/Malignant 30.2% 0.69 0.69
NSCLC_38242124__IMC__87_A7,8 Lung Primary cancer 3,340 Tumor/Malignant 37.6% 0.95 0.20
NSCLC_38242124__IMC__87_A7,9 Lung Primary cancer 2,881 Tumor/Malignant 50.3% 0.98 0.12
NSCLC_38242124__IMC__87_A8,10 Lung Primary cancer 5,468 Tumor/Malignant 81.9% 1.00 0.00
NSCLC_38242124__IMC__87_A8,11 Lung Primary cancer 359 Tumor/Malignant 67.7% 0.86 0.31
NSCLC_38242124__IMC__87_A8,12 Lung Primary cancer 4,213 Tumor/Malignant 71.6% 0.98 0.07
NSCLC_38242124__IMC__87_A8,13 Lung Primary cancer 5,888 Lymphoid 25.8% 0.51 0.71
NSCLC_38242124__IMC__87_A8,14 Lung Primary cancer 2,819 Tumor/Malignant 29.9% 0.75 0.67
NSCLC_38242124__IMC__87_A8,15 Lung Primary cancer 2,151 Stromal 24.3% 0.75 0.59
NSCLC_38242124__IMC__87_A8,16 Lung Primary cancer 1,026 Other 28.0% 0.46 0.85
NSCLC_38242124__IMC__87_A8,17 Lung Primary cancer 2,464 Tumor/Malignant 54.4% 0.99 0.06
NSCLC_38242124__IMC__87_A8,2 Lung Primary cancer 3,633 Tumor/Malignant 30.9% 0.97 0.18
NSCLC_38242124__IMC__87_A8,3 Lung Primary cancer 3,330 Tumor/Malignant 46.2% 0.94 0.21
NSCLC_38242124__IMC__87_A8,4 Lung Primary cancer 3,352 Tumor/Malignant 33.2% 0.96 0.15
NSCLC_38242124__IMC__87_A8,5 Lung Primary cancer 3,203 Tumor/Malignant 43.6% 0.99 0.08
NSCLC_38242124__IMC__87_A8,6 Lung Primary cancer 3,005 Tumor/Malignant 42.4% 0.99 0.07
NSCLC_38242124__IMC__87_A8,7 Lung Primary cancer 3,097 Tumor/Malignant 23.7% 0.90 0.36

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A7,4 Lung Primary cancer 3,806 Tumor/Malignant cell 49.4% 0.95 0.14
NSCLC_38242124__IMC__87_A7,5 Lung Primary cancer 2,094 Tumor/Malignant cell 34.1% 0.92 0.35
NSCLC_38242124__IMC__87_A7,6 Lung Primary cancer 2,595 Tumor/Malignant cell 38.0% 0.80 0.55
NSCLC_38242124__IMC__87_A7,7 Lung Primary cancer 3,480 Tumor/Malignant cell 40.9% 0.85 0.46
NSCLC_38242124__IMC__87_A7,8 Lung Primary cancer 3,340 Tumor/Malignant cell 43.5% 0.93 0.26
NSCLC_38242124__IMC__87_A7,9 Lung Primary cancer 2,881 Tumor/Malignant cell 56.6% 0.94 0.19
NSCLC_38242124__IMC__87_A8,10 Lung Primary cancer 5,468 Tumor/Malignant cell 96.8% 1.00 0.00
NSCLC_38242124__IMC__87_A8,11 Lung Primary cancer 359 Tumor/Malignant cell 66.3% 0.87 0.31
NSCLC_38242124__IMC__87_A8,12 Lung Primary cancer 4,213 Tumor/Malignant cell 70.8% 0.99 0.06
NSCLC_38242124__IMC__87_A8,13 Lung Primary cancer 5,888 B cell 37.2% 0.49 0.89
NSCLC_38242124__IMC__87_A8,14 Lung Primary cancer 2,819 Tumor/Malignant cell 37.0% 0.97 0.18
NSCLC_38242124__IMC__87_A8,15 Lung Primary cancer 2,151 Fibroblast 40.0% 0.87 0.37
NSCLC_38242124__IMC__87_A8,16 Lung Primary cancer 1,026 Other 34.5% 0.39 0.88
NSCLC_38242124__IMC__87_A8,17 Lung Primary cancer 2,464 Tumor/Malignant cell 63.9% 0.96 0.12
NSCLC_38242124__IMC__87_A8,2 Lung Primary cancer 3,633 Fibroblast 39.5% 0.42 0.91
NSCLC_38242124__IMC__87_A8,3 Lung Primary cancer 3,330 Tumor/Malignant cell 50.8% 0.92 0.26
NSCLC_38242124__IMC__87_A8,4 Lung Primary cancer 3,352 Tumor/Malignant cell 33.4% 0.96 0.15
NSCLC_38242124__IMC__87_A8,5 Lung Primary cancer 3,203 Tumor/Malignant cell 58.1% 0.95 0.19
NSCLC_38242124__IMC__87_A8,6 Lung Primary cancer 3,005 Tumor/Malignant cell 52.8% 0.96 0.15
NSCLC_38242124__IMC__87_A8,7 Lung Primary cancer 3,097 Tumor/Malignant cell 38.0% 0.83 0.54