scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A7,4 Lung Primary cancer 3,806 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A7,5 Lung Primary cancer 2,094 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,6 Lung Primary cancer 2,595 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,7 Lung Primary cancer 3,480 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A7,8 Lung Primary cancer 3,340 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,9 Lung Primary cancer 2,881 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A8,10 Lung Primary cancer 5,468 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A8,11 Lung Primary cancer 359 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,12 Lung Primary cancer 4,213 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,13 Lung Primary cancer 5,888 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A8,14 Lung Primary cancer 2,819 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,15 Lung Primary cancer 2,151 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,16 Lung Primary cancer 1,026 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,17 Lung Primary cancer 2,464 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,2 Lung Primary cancer 3,633 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,3 Lung Primary cancer 3,330 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,4 Lung Primary cancer 3,352 0.39 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A8,5 Lung Primary cancer 3,203 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,6 Lung Primary cancer 3,005 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,7 Lung Primary cancer 3,097 0.15 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A7,4 Lung Primary cancer 3,806 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A7,5 Lung Primary cancer 2,094 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,6 Lung Primary cancer 2,595 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A7,7 Lung Primary cancer 3,480 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_A7,8 Lung Primary cancer 3,340 0.29 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A7,9 Lung Primary cancer 2,881 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A8,10 Lung Primary cancer 5,468 0.04 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A8,11 Lung Primary cancer 359 0.18 0.23 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,12 Lung Primary cancer 4,213 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,13 Lung Primary cancer 5,888 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,14 Lung Primary cancer 2,819 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,15 Lung Primary cancer 2,151 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,16 Lung Primary cancer 1,026 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,17 Lung Primary cancer 2,464 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,2 Lung Primary cancer 3,633 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,3 Lung Primary cancer 3,330 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,4 Lung Primary cancer 3,352 0.39 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A8,5 Lung Primary cancer 3,203 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,6 Lung Primary cancer 3,005 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,7 Lung Primary cancer 3,097 0.15 0.17 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A7,4 Lung Primary cancer 3,806 0.42 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A7,5 Lung Primary cancer 2,094 0.31 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A7,6 Lung Primary cancer 2,595 0.27 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A7,7 Lung Primary cancer 3,480 0.15 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A7,8 Lung Primary cancer 3,340 0.29 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A7,9 Lung Primary cancer 2,881 0.36 0.16 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_A8,10 Lung Primary cancer 5,468 0.04 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_A8,11 Lung Primary cancer 359 0.18 0.15 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,12 Lung Primary cancer 4,213 0.31 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,13 Lung Primary cancer 5,888 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,14 Lung Primary cancer 2,819 0.29 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,15 Lung Primary cancer 2,151 0.23 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,16 Lung Primary cancer 1,026 0.26 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,17 Lung Primary cancer 2,464 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,2 Lung Primary cancer 3,633 0.32 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,3 Lung Primary cancer 3,330 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,4 Lung Primary cancer 3,352 0.39 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_A8,5 Lung Primary cancer 3,203 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,6 Lung Primary cancer 3,005 0.16 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,7 Lung Primary cancer 3,097 0.15 0.11 Homogeneous Weakly segregated