scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A8,8 Lung Primary cancer 2,518 Stromal 34.3% 0.83 0.45
NSCLC_38242124__IMC__87_A8,9 Lung Primary cancer 2,976 Tumor/Malignant 76.6% 0.95 0.16
NSCLC_38242124__IMC__87_B1,1 Lung Primary cancer 2,500 Tumor/Malignant 75.6% 0.98 0.08
NSCLC_38242124__IMC__87_B1,10 Lung Primary cancer 3,058 Tumor/Malignant 84.2% 0.97 0.08
NSCLC_38242124__IMC__87_B1,11 Lung Primary cancer 2,689 Tumor/Malignant 65.4% 0.96 0.12
NSCLC_38242124__IMC__87_B1,12 Lung Primary cancer 2,296 Tumor/Malignant 66.2% 0.97 0.11
NSCLC_38242124__IMC__87_B1,13 Lung Primary cancer 3,976 Tumor/Malignant 56.3% 0.92 0.24
NSCLC_38242124__IMC__87_B1,14 Lung Primary cancer 3,324 Tumor/Malignant 34.8% 0.92 0.24
NSCLC_38242124__IMC__87_B1,15 Lung Primary cancer 1,374 Stromal 31.2% 0.41 1.02
NSCLC_38242124__IMC__87_B1,16 Lung Primary cancer 1,351 Tumor/Malignant 80.2% 0.99 0.04
NSCLC_38242124__IMC__87_B1,17 Lung Primary cancer 3,171 Stromal 29.2% 0.51 0.83
NSCLC_38242124__IMC__87_B1,2 Lung Primary cancer 3,919 Tumor/Malignant 34.5% 0.93 0.19
NSCLC_38242124__IMC__87_B1,3 Lung Primary cancer 2,577 Tumor/Malignant 62.9% 0.95 0.19
NSCLC_38242124__IMC__87_B1,4 Lung Primary cancer 2,857 Tumor/Malignant 59.7% 0.97 0.10
NSCLC_38242124__IMC__87_B1,5 Lung Primary cancer 2,602 Tumor/Malignant 40.7% 0.85 0.35
NSCLC_38242124__IMC__87_B1,6 Lung Primary cancer 513 Tumor/Malignant 55.6% 0.94 0.18
NSCLC_38242124__IMC__87_B1,7 Lung Primary cancer 3,546 Tumor/Malignant 67.2% 0.97 0.12
NSCLC_38242124__IMC__87_B1,8 Lung Primary cancer 2,515 Stromal 30.7% 0.54 0.86
NSCLC_38242124__IMC__87_B1,9 Lung Primary cancer 3,200 Tumor/Malignant 39.8% 0.76 0.52
NSCLC_38242124__IMC__87_B2,1 Lung Primary cancer 2,416 Tumor/Malignant 76.6% 0.99 0.07

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A8,8 Lung Primary cancer 2,518 Tumor/Malignant 28.0% 0.96 0.17
NSCLC_38242124__IMC__87_A8,9 Lung Primary cancer 2,976 Tumor/Malignant 54.6% 1.00 0.02
NSCLC_38242124__IMC__87_B1,1 Lung Primary cancer 2,500 Tumor/Malignant 67.6% 0.99 0.03
NSCLC_38242124__IMC__87_B1,10 Lung Primary cancer 3,058 Tumor/Malignant 81.9% 0.98 0.07
NSCLC_38242124__IMC__87_B1,11 Lung Primary cancer 2,689 Tumor/Malignant 60.6% 0.98 0.08
NSCLC_38242124__IMC__87_B1,12 Lung Primary cancer 2,296 Tumor/Malignant 54.7% 0.99 0.04
NSCLC_38242124__IMC__87_B1,13 Lung Primary cancer 3,976 Tumor/Malignant 39.1% 0.97 0.11
NSCLC_38242124__IMC__87_B1,14 Lung Primary cancer 3,324 Tumor/Malignant 29.2% 0.96 0.15
NSCLC_38242124__IMC__87_B1,15 Lung Primary cancer 1,374 Stromal 35.0% 0.35 1.04
NSCLC_38242124__IMC__87_B1,16 Lung Primary cancer 1,351 Tumor/Malignant 59.0% 0.99 0.04
NSCLC_38242124__IMC__87_B1,17 Lung Primary cancer 3,171 Stromal 25.4% 0.50 0.95
NSCLC_38242124__IMC__87_B1,2 Lung Primary cancer 3,919 Tumor/Malignant 32.7% 0.95 0.16
NSCLC_38242124__IMC__87_B1,3 Lung Primary cancer 2,577 Tumor/Malignant 62.8% 0.94 0.19
NSCLC_38242124__IMC__87_B1,4 Lung Primary cancer 2,857 Tumor/Malignant 54.0% 0.99 0.04
NSCLC_38242124__IMC__87_B1,5 Lung Primary cancer 2,602 Tumor/Malignant 33.9% 0.90 0.27
NSCLC_38242124__IMC__87_B1,6 Lung Primary cancer 513 Tumor/Malignant 56.3% 0.94 0.20
NSCLC_38242124__IMC__87_B1,7 Lung Primary cancer 3,546 Tumor/Malignant 61.1% 0.98 0.07
NSCLC_38242124__IMC__87_B1,8 Lung Primary cancer 2,515 Stromal 23.8% 0.56 0.91
NSCLC_38242124__IMC__87_B1,9 Lung Primary cancer 3,200 Tumor/Malignant 37.8% 0.97 0.12
NSCLC_38242124__IMC__87_B2,1 Lung Primary cancer 2,416 Tumor/Malignant 67.8% 1.00 0.01

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_A8,8 Lung Primary cancer 2,518 Fibroblast 33.2% 0.82 0.48
NSCLC_38242124__IMC__87_A8,9 Lung Primary cancer 2,976 Tumor/Malignant cell 75.1% 0.95 0.15
NSCLC_38242124__IMC__87_B1,1 Lung Primary cancer 2,500 Tumor/Malignant cell 76.0% 0.98 0.09
NSCLC_38242124__IMC__87_B1,10 Lung Primary cancer 3,058 Tumor/Malignant cell 82.3% 0.98 0.07
NSCLC_38242124__IMC__87_B1,11 Lung Primary cancer 2,689 Tumor/Malignant cell 65.1% 0.96 0.12
NSCLC_38242124__IMC__87_B1,12 Lung Primary cancer 2,296 Tumor/Malignant cell 67.5% 0.97 0.13
NSCLC_38242124__IMC__87_B1,13 Lung Primary cancer 3,976 Tumor/Malignant cell 59.6% 0.90 0.27
NSCLC_38242124__IMC__87_B1,14 Lung Primary cancer 3,324 Tumor/Malignant cell 35.7% 0.91 0.26
NSCLC_38242124__IMC__87_B1,15 Lung Primary cancer 1,374 Tumor/Malignant cell 28.0% 0.62 0.81
NSCLC_38242124__IMC__87_B1,16 Lung Primary cancer 1,351 Tumor/Malignant cell 80.2% 0.99 0.04
NSCLC_38242124__IMC__87_B1,17 Lung Primary cancer 3,171 Fibroblast 23.6% 0.75 0.62
NSCLC_38242124__IMC__87_B1,2 Lung Primary cancer 3,919 Tumor/Malignant cell 35.0% 0.93 0.21
NSCLC_38242124__IMC__87_B1,3 Lung Primary cancer 2,577 Tumor/Malignant cell 62.9% 0.95 0.19
NSCLC_38242124__IMC__87_B1,4 Lung Primary cancer 2,857 Tumor/Malignant cell 60.9% 0.97 0.11
NSCLC_38242124__IMC__87_B1,5 Lung Primary cancer 2,602 Tumor/Malignant cell 41.9% 0.85 0.38
NSCLC_38242124__IMC__87_B1,6 Lung Primary cancer 513 Tumor/Malignant cell 55.6% 0.94 0.19
NSCLC_38242124__IMC__87_B1,7 Lung Primary cancer 3,546 Tumor/Malignant cell 67.1% 0.97 0.12
NSCLC_38242124__IMC__87_B1,8 Lung Primary cancer 2,515 Fibroblast 32.0% 0.71 0.72
NSCLC_38242124__IMC__87_B1,9 Lung Primary cancer 3,200 Tumor/Malignant cell 63.7% 0.89 0.29
NSCLC_38242124__IMC__87_B2,1 Lung Primary cancer 2,416 Tumor/Malignant cell 76.9% 0.99 0.07