scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A8,8 Lung Primary cancer 2,518 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_A8,9 Lung Primary cancer 2,976 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,1 Lung Primary cancer 2,500 0.14 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B1,10 Lung Primary cancer 3,058 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B1,11 Lung Primary cancer 2,689 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B1,12 Lung Primary cancer 2,296 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,13 Lung Primary cancer 3,976 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,14 Lung Primary cancer 3,324 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,15 Lung Primary cancer 1,374 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B1,16 Lung Primary cancer 1,351 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,17 Lung Primary cancer 3,171 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,2 Lung Primary cancer 3,919 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,3 Lung Primary cancer 2,577 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,4 Lung Primary cancer 2,857 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B1,5 Lung Primary cancer 2,602 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,6 Lung Primary cancer 513 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,7 Lung Primary cancer 3,546 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,8 Lung Primary cancer 2,515 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B1,9 Lung Primary cancer 3,200 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,1 Lung Primary cancer 2,416 0.16 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A8,8 Lung Primary cancer 2,518 0.31 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,9 Lung Primary cancer 2,976 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,1 Lung Primary cancer 2,500 0.14 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B1,10 Lung Primary cancer 3,058 0.12 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B1,11 Lung Primary cancer 2,689 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B1,12 Lung Primary cancer 2,296 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,13 Lung Primary cancer 3,976 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,14 Lung Primary cancer 3,324 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,15 Lung Primary cancer 1,374 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B1,16 Lung Primary cancer 1,351 0.18 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,17 Lung Primary cancer 3,171 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,2 Lung Primary cancer 3,919 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,3 Lung Primary cancer 2,577 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,4 Lung Primary cancer 2,857 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B1,5 Lung Primary cancer 2,602 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,6 Lung Primary cancer 513 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,7 Lung Primary cancer 3,546 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B1,8 Lung Primary cancer 2,515 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B1,9 Lung Primary cancer 3,200 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,1 Lung Primary cancer 2,416 0.16 0.13 Weakly structured Weakly segregated

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_A8,8 Lung Primary cancer 2,518 0.31 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_A8,9 Lung Primary cancer 2,976 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,1 Lung Primary cancer 2,500 0.14 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B1,10 Lung Primary cancer 3,058 0.12 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B1,11 Lung Primary cancer 2,689 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B1,12 Lung Primary cancer 2,296 0.23 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,13 Lung Primary cancer 3,976 0.22 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,14 Lung Primary cancer 3,324 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,15 Lung Primary cancer 1,374 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B1,16 Lung Primary cancer 1,351 0.18 0.01 Weakly structured Neutral
NSCLC_38242124__IMC__87_B1,17 Lung Primary cancer 3,171 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,2 Lung Primary cancer 3,919 0.31 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,3 Lung Primary cancer 2,577 0.26 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,4 Lung Primary cancer 2,857 0.40 0.12 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B1,5 Lung Primary cancer 2,602 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,6 Lung Primary cancer 513 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,7 Lung Primary cancer 3,546 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B1,8 Lung Primary cancer 2,515 0.15 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B1,9 Lung Primary cancer 3,200 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B2,1 Lung Primary cancer 2,416 0.16 0.06 Weakly structured Weakly segregated