scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B2,10 Lung Primary cancer 3,801 0.09 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B2,11 Lung Primary cancer 3,550 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,12 Lung Primary cancer 3,636 0.40 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B2,13 Lung Primary cancer 3,196 0.01 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B2,14 Lung Primary cancer 3,738 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B2,15 Lung Primary cancer 1,327 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B2,16 Lung Primary cancer 2,086 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B2,17 Lung Primary cancer 2,793 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,2 Lung Primary cancer 4,972 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,3 Lung Primary cancer 3,223 0.36 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B2,4 Lung Primary cancer 3,763 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,5 Lung Primary cancer 3,386 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,7 Lung Primary cancer 3,292 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,8 Lung Primary cancer 3,497 0.45 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B2,9 Lung Primary cancer 2,804 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,1 Lung Primary cancer 2,960 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,10 Lung Primary cancer 3,144 0.03 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B3,11 Lung Primary cancer 2,659 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,12 Lung Primary cancer 2,159 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,13 Lung Primary cancer 2,467 0.20 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B2,10 Lung Primary cancer 3,801 0.09 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B2,11 Lung Primary cancer 3,550 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,12 Lung Primary cancer 3,636 0.40 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B2,13 Lung Primary cancer 3,196 0.01 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B2,14 Lung Primary cancer 3,738 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B2,15 Lung Primary cancer 1,327 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B2,16 Lung Primary cancer 2,086 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B2,17 Lung Primary cancer 2,793 0.18 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,2 Lung Primary cancer 4,972 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,3 Lung Primary cancer 3,223 0.36 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B2,4 Lung Primary cancer 3,763 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,5 Lung Primary cancer 3,386 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,7 Lung Primary cancer 3,292 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B2,8 Lung Primary cancer 3,497 0.45 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B2,9 Lung Primary cancer 2,804 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,1 Lung Primary cancer 2,960 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,10 Lung Primary cancer 3,144 0.03 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B3,11 Lung Primary cancer 2,659 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,12 Lung Primary cancer 2,159 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,13 Lung Primary cancer 2,467 0.20 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B2,10 Lung Primary cancer 3,801 0.09 0.18 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B2,11 Lung Primary cancer 3,550 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B2,12 Lung Primary cancer 3,636 0.40 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B2,13 Lung Primary cancer 3,196 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B2,14 Lung Primary cancer 3,738 0.11 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B2,15 Lung Primary cancer 1,327 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B2,16 Lung Primary cancer 2,086 0.35 0.09 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B2,17 Lung Primary cancer 2,793 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B2,2 Lung Primary cancer 4,972 0.22 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B2,3 Lung Primary cancer 3,223 0.36 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B2,4 Lung Primary cancer 3,763 0.34 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B2,5 Lung Primary cancer 3,386 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B2,7 Lung Primary cancer 3,292 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B2,8 Lung Primary cancer 3,497 0.45 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B2,9 Lung Primary cancer 2,804 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,1 Lung Primary cancer 2,960 0.18 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,10 Lung Primary cancer 3,144 0.03 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B3,11 Lung Primary cancer 2,659 0.17 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,12 Lung Primary cancer 2,159 0.21 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,13 Lung Primary cancer 2,467 0.20 0.13 Weakly structured Weakly segregated