scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B3,14 Lung Primary cancer 1,960 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,16 Lung Primary cancer 1,779 0.21 0.25 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,17 Lung Primary cancer 3,804 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,2 Lung Primary cancer 2,855 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,3 Lung Primary cancer 2,849 0.18 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,4 Lung Primary cancer 4,398 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B3,6 Lung Primary cancer 3,332 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B3,7 Lung Primary cancer 2,618 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,9 Lung Primary cancer 3,195 0.15 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,1 Lung Primary cancer 3,188 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,10 Lung Primary cancer 3,266 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,11 Lung Primary cancer 3,881 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,12 Lung Primary cancer 3,934 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,14 Lung Primary cancer 2,847 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,15 Lung Primary cancer 116 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,16 Lung Primary cancer 328 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,17 Lung Primary cancer 317 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,2 Lung Primary cancer 3,258 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B4,3 Lung Primary cancer 127 0.15 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,4 Lung Primary cancer 3,650 0.34 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B3,14 Lung Primary cancer 1,960 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,16 Lung Primary cancer 1,779 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,17 Lung Primary cancer 3,804 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,2 Lung Primary cancer 2,855 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,3 Lung Primary cancer 2,849 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,4 Lung Primary cancer 4,398 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B3,6 Lung Primary cancer 3,332 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B3,7 Lung Primary cancer 2,618 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B3,9 Lung Primary cancer 3,195 0.15 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,1 Lung Primary cancer 3,188 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,10 Lung Primary cancer 3,266 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,11 Lung Primary cancer 3,881 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,12 Lung Primary cancer 3,934 0.08 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B4,14 Lung Primary cancer 2,847 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,15 Lung Primary cancer 116 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,16 Lung Primary cancer 328 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,17 Lung Primary cancer 317 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,2 Lung Primary cancer 3,258 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B4,3 Lung Primary cancer 127 0.15 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,4 Lung Primary cancer 3,650 0.34 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B3,14 Lung Primary cancer 1,960 0.19 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,16 Lung Primary cancer 1,779 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,17 Lung Primary cancer 3,804 0.33 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,2 Lung Primary cancer 2,855 0.34 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,3 Lung Primary cancer 2,849 0.19 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,4 Lung Primary cancer 4,398 0.11 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B3,6 Lung Primary cancer 3,332 0.09 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B3,7 Lung Primary cancer 2,618 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B3,9 Lung Primary cancer 3,195 0.15 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B4,1 Lung Primary cancer 3,188 0.20 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,10 Lung Primary cancer 3,266 0.07 0.16 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,11 Lung Primary cancer 3,881 0.22 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,12 Lung Primary cancer 3,934 0.08 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B4,14 Lung Primary cancer 2,847 0.32 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,15 Lung Primary cancer 116 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,16 Lung Primary cancer 328 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,17 Lung Primary cancer 317 0.28 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,2 Lung Primary cancer 3,258 0.35 0.07 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B4,3 Lung Primary cancer 127 0.16 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,4 Lung Primary cancer 3,650 0.34 0.12 Weakly structured Weakly segregated