scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B4,5 Lung Primary cancer 2,604 Tumor/Malignant 73.2% 0.97 0.11
NSCLC_38242124__IMC__87_B4,6 Lung Primary cancer 3,412 Tumor/Malignant 75.7% 0.98 0.07
NSCLC_38242124__IMC__87_B4,7 Lung Primary cancer 3,084 Immune 25.8% 0.49 0.80
NSCLC_38242124__IMC__87_B4,9 Lung Primary cancer 391 Stromal 44.0% 0.40 0.92
NSCLC_38242124__IMC__87_B5,10 Lung Primary cancer 415 Stromal 52.8% 0.71 0.48
NSCLC_38242124__IMC__87_B5,11 Lung Primary cancer 3,545 Tumor/Malignant 37.6% 0.97 0.12
NSCLC_38242124__IMC__87_B5,12 Lung Primary cancer 2,494 Tumor/Malignant 81.2% 0.99 0.04
NSCLC_38242124__IMC__87_B5,13 Lung Primary cancer 4,118 Tumor/Malignant 27.1% 0.56 0.74
NSCLC_38242124__IMC__87_B5,14 Lung Primary cancer 2,217 Tumor/Malignant 58.3% 0.96 0.17
NSCLC_38242124__IMC__87_B5,15 Lung Primary cancer 2,216 Tumor/Malignant 27.8% 0.51 0.89
NSCLC_38242124__IMC__87_B5,16 Lung Primary cancer 3,073 Tumor/Malignant 39.1% 0.94 0.20
NSCLC_38242124__IMC__87_B5,17 Lung Primary cancer 1,838 Tumor/Malignant 41.4% 0.91 0.28
NSCLC_38242124__IMC__87_B5,2 Lung Primary cancer 2,093 Tumor/Malignant 39.4% 0.90 0.30
NSCLC_38242124__IMC__87_B5,3 Lung Primary cancer 3,330 Tumor/Malignant 50.5% 0.94 0.20
NSCLC_38242124__IMC__87_B5,4 Lung Primary cancer 4,056 Tumor/Malignant 69.7% 1.00 0.02
NSCLC_38242124__IMC__87_B5,5 Lung Primary cancer 4,838 Tumor/Malignant 48.3% 0.87 0.36
NSCLC_38242124__IMC__87_B5,6 Lung Primary cancer 2,629 Tumor/Malignant 67.2% 0.95 0.15
NSCLC_38242124__IMC__87_B5,7 Lung Primary cancer 5,015 Tumor/Malignant 72.6% 0.98 0.08
NSCLC_38242124__IMC__87_B5,8 Lung Primary cancer 3,832 Tumor/Malignant 52.9% 0.98 0.08
NSCLC_38242124__IMC__87_B6,1 Lung Primary cancer 3,925 Tumor/Malignant 74.5% 0.99 0.03

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B4,5 Lung Primary cancer 2,604 Tumor/Malignant 60.9% 1.00 0.04
NSCLC_38242124__IMC__87_B4,6 Lung Primary cancer 3,412 Tumor/Malignant 69.6% 0.99 0.05
NSCLC_38242124__IMC__87_B4,7 Lung Primary cancer 3,084 Myeloid 23.1% 0.37 1.04
NSCLC_38242124__IMC__87_B4,9 Lung Primary cancer 391 Stromal 44.8% 0.41 0.93
NSCLC_38242124__IMC__87_B5,10 Lung Primary cancer 415 Stromal 52.3% 0.71 0.48
NSCLC_38242124__IMC__87_B5,11 Lung Primary cancer 3,545 Tumor/Malignant 39.4% 0.97 0.13
NSCLC_38242124__IMC__87_B5,12 Lung Primary cancer 2,494 Tumor/Malignant 81.4% 0.99 0.04
NSCLC_38242124__IMC__87_B5,13 Lung Primary cancer 4,118 Tumor/Malignant 27.9% 0.89 0.38
NSCLC_38242124__IMC__87_B5,14 Lung Primary cancer 2,217 Tumor/Malignant 51.5% 0.98 0.11
NSCLC_38242124__IMC__87_B5,15 Lung Primary cancer 2,216 Tumor/Malignant 23.7% 0.55 0.88
NSCLC_38242124__IMC__87_B5,16 Lung Primary cancer 3,073 Tumor/Malignant 39.5% 0.94 0.21
NSCLC_38242124__IMC__87_B5,17 Lung Primary cancer 1,838 Tumor/Malignant 22.9% 0.99 0.06
NSCLC_38242124__IMC__87_B5,2 Lung Primary cancer 2,093 Tumor/Malignant 31.8% 0.96 0.18
NSCLC_38242124__IMC__87_B5,3 Lung Primary cancer 3,330 Tumor/Malignant 34.0% 1.00 0.04
NSCLC_38242124__IMC__87_B5,4 Lung Primary cancer 4,056 Tumor/Malignant 69.9% 1.00 0.03
NSCLC_38242124__IMC__87_B5,5 Lung Primary cancer 4,838 Tumor/Malignant 40.1% 0.90 0.30
NSCLC_38242124__IMC__87_B5,6 Lung Primary cancer 2,629 Tumor/Malignant 49.6% 1.00 0.03
NSCLC_38242124__IMC__87_B5,7 Lung Primary cancer 5,015 Tumor/Malignant 65.0% 1.00 0.03
NSCLC_38242124__IMC__87_B5,8 Lung Primary cancer 3,832 Tumor/Malignant 53.0% 0.98 0.09
NSCLC_38242124__IMC__87_B6,1 Lung Primary cancer 3,925 Tumor/Malignant 78.3% 0.99 0.05

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B4,5 Lung Primary cancer 2,604 Tumor/Malignant cell 67.8% 0.98 0.08
NSCLC_38242124__IMC__87_B4,6 Lung Primary cancer 3,412 Tumor/Malignant cell 76.9% 0.98 0.08
NSCLC_38242124__IMC__87_B4,7 Lung Primary cancer 3,084 Other 24.8% 0.37 1.08
NSCLC_38242124__IMC__87_B4,9 Lung Primary cancer 391 Fibroblast 46.0% 0.29 1.05
NSCLC_38242124__IMC__87_B5,10 Lung Primary cancer 415 Fibroblast 52.8% 0.63 0.59
NSCLC_38242124__IMC__87_B5,11 Lung Primary cancer 3,545 Tumor/Malignant cell 39.6% 0.97 0.14
NSCLC_38242124__IMC__87_B5,12 Lung Primary cancer 2,494 Tumor/Malignant cell 79.9% 0.99 0.03
NSCLC_38242124__IMC__87_B5,13 Lung Primary cancer 4,118 Tumor/Malignant cell 40.3% 0.83 0.49
NSCLC_38242124__IMC__87_B5,14 Lung Primary cancer 2,217 Tumor/Malignant cell 58.7% 0.96 0.18
NSCLC_38242124__IMC__87_B5,15 Lung Primary cancer 2,216 Tumor/Malignant cell 32.9% 0.88 0.44
NSCLC_38242124__IMC__87_B5,16 Lung Primary cancer 3,073 Tumor/Malignant cell 43.3% 0.93 0.27
NSCLC_38242124__IMC__87_B5,17 Lung Primary cancer 1,838 Tumor/Malignant cell 41.5% 0.91 0.28
NSCLC_38242124__IMC__87_B5,2 Lung Primary cancer 2,093 Tumor/Malignant cell 38.6% 0.91 0.29
NSCLC_38242124__IMC__87_B5,3 Lung Primary cancer 3,330 Tumor/Malignant cell 49.9% 0.95 0.20
NSCLC_38242124__IMC__87_B5,4 Lung Primary cancer 4,056 Tumor/Malignant cell 78.9% 0.97 0.09
NSCLC_38242124__IMC__87_B5,5 Lung Primary cancer 4,838 Tumor/Malignant cell 49.6% 0.86 0.40
NSCLC_38242124__IMC__87_B5,6 Lung Primary cancer 2,629 Tumor/Malignant cell 67.1% 0.96 0.15
NSCLC_38242124__IMC__87_B5,7 Lung Primary cancer 5,015 Tumor/Malignant cell 79.8% 0.96 0.12
NSCLC_38242124__IMC__87_B5,8 Lung Primary cancer 3,832 Tumor/Malignant cell 70.6% 0.93 0.18
NSCLC_38242124__IMC__87_B6,1 Lung Primary cancer 3,925 Tumor/Malignant cell 81.5% 0.99 0.04