scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B4,5 Lung Primary cancer 2,604 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B4,6 Lung Primary cancer 3,412 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,7 Lung Primary cancer 3,084 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,9 Lung Primary cancer 391 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,10 Lung Primary cancer 415 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,11 Lung Primary cancer 3,545 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,12 Lung Primary cancer 2,494 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B5,13 Lung Primary cancer 4,118 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,14 Lung Primary cancer 2,217 0.31 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,15 Lung Primary cancer 2,216 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,16 Lung Primary cancer 3,073 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,17 Lung Primary cancer 1,838 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B5,2 Lung Primary cancer 2,093 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,3 Lung Primary cancer 3,330 0.33 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,4 Lung Primary cancer 4,056 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,5 Lung Primary cancer 4,838 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,6 Lung Primary cancer 2,629 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,7 Lung Primary cancer 5,015 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,8 Lung Primary cancer 3,832 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,1 Lung Primary cancer 3,925 0.24 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B4,5 Lung Primary cancer 2,604 0.11 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B4,6 Lung Primary cancer 3,412 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,7 Lung Primary cancer 3,084 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B4,9 Lung Primary cancer 391 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,10 Lung Primary cancer 415 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,11 Lung Primary cancer 3,545 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,12 Lung Primary cancer 2,494 0.04 0.19 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B5,13 Lung Primary cancer 4,118 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,14 Lung Primary cancer 2,217 0.31 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,15 Lung Primary cancer 2,216 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,16 Lung Primary cancer 3,073 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,17 Lung Primary cancer 1,838 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B5,2 Lung Primary cancer 2,093 0.33 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,3 Lung Primary cancer 3,330 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,4 Lung Primary cancer 4,056 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,5 Lung Primary cancer 4,838 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,6 Lung Primary cancer 2,629 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,7 Lung Primary cancer 5,015 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B5,8 Lung Primary cancer 3,832 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,1 Lung Primary cancer 3,925 0.24 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B4,5 Lung Primary cancer 2,604 0.11 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B4,6 Lung Primary cancer 3,412 0.21 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,7 Lung Primary cancer 3,084 0.27 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B4,9 Lung Primary cancer 391 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,10 Lung Primary cancer 415 0.24 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,11 Lung Primary cancer 3,545 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,12 Lung Primary cancer 2,494 0.04 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B5,13 Lung Primary cancer 4,118 0.22 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,14 Lung Primary cancer 2,217 0.31 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,15 Lung Primary cancer 2,216 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,16 Lung Primary cancer 3,073 0.32 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,17 Lung Primary cancer 1,838 0.35 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B5,2 Lung Primary cancer 2,093 0.33 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,3 Lung Primary cancer 3,330 0.36 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B5,4 Lung Primary cancer 4,056 0.26 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,5 Lung Primary cancer 4,838 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,6 Lung Primary cancer 2,629 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,7 Lung Primary cancer 5,015 0.21 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B5,8 Lung Primary cancer 3,832 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,1 Lung Primary cancer 3,925 0.24 0.10 Weakly structured Weakly segregated