scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B6,10 Lung Primary cancer 3,533 Stromal 45.4% 0.90 0.32
NSCLC_38242124__IMC__87_B6,11 Lung Primary cancer 3,555 Tumor/Malignant 51.0% 0.95 0.19
NSCLC_38242124__IMC__87_B6,12 Lung Primary cancer 3,804 Tumor/Malignant 31.1% 0.94 0.23
NSCLC_38242124__IMC__87_B6,13 Lung Primary cancer 4,404 Immune 38.0% 0.95 0.20
NSCLC_38242124__IMC__87_B6,14 Lung Primary cancer 2,764 Tumor/Malignant 59.6% 0.98 0.06
NSCLC_38242124__IMC__87_B6,15 Lung Primary cancer 3,800 Stromal 32.6% 0.63 0.76
NSCLC_38242124__IMC__87_B6,16 Lung Primary cancer 3,370 Tumor/Malignant 29.4% 0.89 0.29
NSCLC_38242124__IMC__87_B6,17 Lung Primary cancer 3,543 Tumor/Malignant 62.3% 0.97 0.13
NSCLC_38242124__IMC__87_B6,2 Lung Primary cancer 1,932 Immune 24.7% 0.43 0.97
NSCLC_38242124__IMC__87_B6,3 Lung Primary cancer 1,848 Tumor/Malignant 40.0% 0.96 0.15
NSCLC_38242124__IMC__87_B6,4 Lung Primary cancer 4,237 Tumor/Malignant 86.1% 1.00 0.02
NSCLC_38242124__IMC__87_B6,5 Lung Primary cancer 5,070 Tumor/Malignant 28.3% 0.85 0.41
NSCLC_38242124__IMC__87_B6,6 Lung Primary cancer 2,534 Tumor/Malignant 59.7% 0.95 0.21
NSCLC_38242124__IMC__87_B6,7 Lung Primary cancer 4,179 Stromal 61.7% 0.96 0.13
NSCLC_38242124__IMC__87_B6,8 Lung Primary cancer 3,449 Tumor/Malignant 53.6% 0.94 0.18
NSCLC_38242124__IMC__87_B6,9 Lung Primary cancer 3,163 Immune 26.8% 0.41 0.93
NSCLC_38242124__IMC__87_B7,1 Lung Primary cancer 3,258 Tumor/Malignant 45.7% 0.96 0.11
NSCLC_38242124__IMC__87_B7,10 Lung Primary cancer 5,361 Tumor/Malignant 84.0% 0.98 0.06
NSCLC_38242124__IMC__87_B7,11 Lung Primary cancer 3,962 Tumor/Malignant 78.6% 0.98 0.08
NSCLC_38242124__IMC__87_B7,12 Lung Primary cancer 1,054 Stromal 39.4% 0.98 0.06

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B6,10 Lung Primary cancer 3,533 Stromal 40.7% 0.90 0.28
NSCLC_38242124__IMC__87_B6,11 Lung Primary cancer 3,555 Tumor/Malignant 50.4% 0.95 0.19
NSCLC_38242124__IMC__87_B6,12 Lung Primary cancer 3,804 Tumor/Malignant 31.3% 0.94 0.24
NSCLC_38242124__IMC__87_B6,13 Lung Primary cancer 4,404 Lymphoid 29.4% 0.90 0.34
NSCLC_38242124__IMC__87_B6,14 Lung Primary cancer 2,764 Tumor/Malignant 41.3% 0.99 0.06
NSCLC_38242124__IMC__87_B6,15 Lung Primary cancer 3,800 Stromal 23.0% 0.37 1.06
NSCLC_38242124__IMC__87_B6,16 Lung Primary cancer 3,370 Tumor/Malignant 23.9% 0.93 0.19
NSCLC_38242124__IMC__87_B6,17 Lung Primary cancer 3,543 Tumor/Malignant 49.8% 0.99 0.05
NSCLC_38242124__IMC__87_B6,2 Lung Primary cancer 1,932 Stromal 23.9% 0.51 0.92
NSCLC_38242124__IMC__87_B6,3 Lung Primary cancer 1,848 Tumor/Malignant 42.2% 0.94 0.18
NSCLC_38242124__IMC__87_B6,4 Lung Primary cancer 4,237 Tumor/Malignant 90.1% 1.00 0.02
NSCLC_38242124__IMC__87_B6,5 Lung Primary cancer 5,070 Myeloid 21.5% 0.96 0.12
NSCLC_38242124__IMC__87_B6,6 Lung Primary cancer 2,534 Tumor/Malignant 46.5% 0.97 0.13
NSCLC_38242124__IMC__87_B6,7 Lung Primary cancer 4,179 Stromal 40.1% 0.99 0.07
NSCLC_38242124__IMC__87_B6,8 Lung Primary cancer 3,449 Tumor/Malignant 38.2% 0.99 0.07
NSCLC_38242124__IMC__87_B6,9 Lung Primary cancer 3,163 Stromal 23.0% 0.35 1.06
NSCLC_38242124__IMC__87_B7,1 Lung Primary cancer 3,258 Tumor/Malignant 44.5% 0.97 0.10
NSCLC_38242124__IMC__87_B7,10 Lung Primary cancer 5,361 Tumor/Malignant 77.6% 0.99 0.03
NSCLC_38242124__IMC__87_B7,11 Lung Primary cancer 3,962 Tumor/Malignant 78.3% 0.98 0.08
NSCLC_38242124__IMC__87_B7,12 Lung Primary cancer 1,054 Stromal 52.6% 0.95 0.14

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B6,10 Lung Primary cancer 3,533 Fibroblast 43.8% 0.89 0.33
NSCLC_38242124__IMC__87_B6,11 Lung Primary cancer 3,555 Tumor/Malignant cell 52.6% 0.94 0.20
NSCLC_38242124__IMC__87_B6,12 Lung Primary cancer 3,804 Tumor/Malignant cell 38.0% 0.91 0.33
NSCLC_38242124__IMC__87_B6,13 Lung Primary cancer 4,404 Tumor/Malignant cell 31.1% 0.82 0.51
NSCLC_38242124__IMC__87_B6,14 Lung Primary cancer 2,764 Tumor/Malignant cell 60.2% 0.98 0.07
NSCLC_38242124__IMC__87_B6,15 Lung Primary cancer 3,800 Fibroblast 22.1% 0.62 0.86
NSCLC_38242124__IMC__87_B6,16 Lung Primary cancer 3,370 Tumor/Malignant cell 28.4% 0.90 0.29
NSCLC_38242124__IMC__87_B6,17 Lung Primary cancer 3,543 Tumor/Malignant cell 49.2% 0.99 0.05
NSCLC_38242124__IMC__87_B6,2 Lung Primary cancer 1,932 Fibroblast 26.0% 0.39 1.08
NSCLC_38242124__IMC__87_B6,3 Lung Primary cancer 1,848 Tumor/Malignant cell 41.2% 0.95 0.17
NSCLC_38242124__IMC__87_B6,4 Lung Primary cancer 4,237 Tumor/Malignant cell 92.0% 0.99 0.03
NSCLC_38242124__IMC__87_B6,5 Lung Primary cancer 5,070 Tumor/Malignant cell 28.2% 0.86 0.43
NSCLC_38242124__IMC__87_B6,6 Lung Primary cancer 2,534 Tumor/Malignant cell 60.5% 0.94 0.22
NSCLC_38242124__IMC__87_B6,7 Lung Primary cancer 4,179 Fibroblast 59.8% 0.95 0.15
NSCLC_38242124__IMC__87_B6,8 Lung Primary cancer 3,449 Tumor/Malignant cell 55.5% 0.93 0.20
NSCLC_38242124__IMC__87_B6,9 Lung Primary cancer 3,163 T cell 25.2% 0.41 0.97
NSCLC_38242124__IMC__87_B7,1 Lung Primary cancer 3,258 Tumor/Malignant cell 45.9% 0.96 0.12
NSCLC_38242124__IMC__87_B7,10 Lung Primary cancer 5,361 Tumor/Malignant cell 83.5% 0.98 0.06
NSCLC_38242124__IMC__87_B7,11 Lung Primary cancer 3,962 Tumor/Malignant cell 77.8% 0.98 0.08
NSCLC_38242124__IMC__87_B7,12 Lung Primary cancer 1,054 Fibroblast 41.6% 0.89 0.29