scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

Download spatial tables

Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B6,10 Lung Primary cancer 3,533 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,11 Lung Primary cancer 3,555 0.20 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,12 Lung Primary cancer 3,804 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,13 Lung Primary cancer 4,404 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,14 Lung Primary cancer 2,764 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B6,15 Lung Primary cancer 3,800 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,16 Lung Primary cancer 3,370 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,17 Lung Primary cancer 3,543 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,2 Lung Primary cancer 1,932 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,3 Lung Primary cancer 1,848 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,4 Lung Primary cancer 4,237 0.06 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B6,5 Lung Primary cancer 5,070 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B6,6 Lung Primary cancer 2,534 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,7 Lung Primary cancer 4,179 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B6,8 Lung Primary cancer 3,449 0.37 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B6,9 Lung Primary cancer 3,163 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,1 Lung Primary cancer 3,258 0.44 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B7,10 Lung Primary cancer 5,361 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,11 Lung Primary cancer 3,962 0.11 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,12 Lung Primary cancer 1,054 0.09 0.20 Homogeneous Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B6,10 Lung Primary cancer 3,533 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,11 Lung Primary cancer 3,555 0.20 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,12 Lung Primary cancer 3,804 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,13 Lung Primary cancer 4,404 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,14 Lung Primary cancer 2,764 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B6,15 Lung Primary cancer 3,800 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,16 Lung Primary cancer 3,370 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,17 Lung Primary cancer 3,543 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,2 Lung Primary cancer 1,932 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,3 Lung Primary cancer 1,848 0.35 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,4 Lung Primary cancer 4,237 0.06 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B6,5 Lung Primary cancer 5,070 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B6,6 Lung Primary cancer 2,534 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B6,7 Lung Primary cancer 4,179 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B6,8 Lung Primary cancer 3,449 0.37 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B6,9 Lung Primary cancer 3,163 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,1 Lung Primary cancer 3,258 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B7,10 Lung Primary cancer 5,361 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,11 Lung Primary cancer 3,962 0.11 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,12 Lung Primary cancer 1,054 0.09 0.19 Homogeneous Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B6,10 Lung Primary cancer 3,533 0.30 0.15 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,11 Lung Primary cancer 3,555 0.20 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,12 Lung Primary cancer 3,804 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,13 Lung Primary cancer 4,404 0.26 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,14 Lung Primary cancer 2,764 0.42 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B6,15 Lung Primary cancer 3,800 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,16 Lung Primary cancer 3,370 0.29 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,17 Lung Primary cancer 3,543 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,2 Lung Primary cancer 1,932 0.25 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,3 Lung Primary cancer 1,848 0.35 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,4 Lung Primary cancer 4,237 0.06 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B6,5 Lung Primary cancer 5,070 0.43 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B6,6 Lung Primary cancer 2,534 0.19 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B6,7 Lung Primary cancer 4,179 0.14 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B6,8 Lung Primary cancer 3,449 0.37 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B6,9 Lung Primary cancer 3,163 0.25 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B7,1 Lung Primary cancer 3,258 0.44 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B7,10 Lung Primary cancer 5,361 0.14 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B7,11 Lung Primary cancer 3,962 0.11 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B7,12 Lung Primary cancer 1,054 0.13 0.15 Homogeneous Weakly segregated