scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B1,16 Lung Primary cancer 2,528 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B1,17 Lung Primary cancer 1,429 0.28 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,2 Lung Primary cancer 2,305 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,3 Lung Primary cancer 4,171 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,4 Lung Primary cancer 2,713 0.35 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,5 Lung Primary cancer 3,623 0.35 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B1,6 Lung Primary cancer 3,146 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,7 Lung Primary cancer 3,665 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,8 Lung Primary cancer 2,860 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,9 Lung Primary cancer 4,697 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,1 Lung Primary cancer 2,353 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,10 Lung Primary cancer 2,177 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,11 Lung Primary cancer 3,015 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,12 Lung Primary cancer 2,539 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,13 Lung Primary cancer 3,504 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,14 Lung Primary cancer 2,748 0.05 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,15 Lung Primary cancer 3,020 0.25 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,16 Lung Primary cancer 3,084 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,17 Lung Primary cancer 2,285 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,2 Lung Primary cancer 1,910 0.25 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B1,16 Lung Primary cancer 2,528 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B1,17 Lung Primary cancer 1,429 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,2 Lung Primary cancer 2,305 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,3 Lung Primary cancer 4,171 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,4 Lung Primary cancer 2,713 0.35 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,5 Lung Primary cancer 3,623 0.35 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__175_B1,6 Lung Primary cancer 3,146 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,7 Lung Primary cancer 3,665 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,8 Lung Primary cancer 2,860 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B1,9 Lung Primary cancer 4,697 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,1 Lung Primary cancer 2,353 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,10 Lung Primary cancer 2,177 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,11 Lung Primary cancer 3,015 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,12 Lung Primary cancer 2,539 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,13 Lung Primary cancer 3,504 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,14 Lung Primary cancer 2,748 0.05 0.15 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B2,15 Lung Primary cancer 3,020 0.25 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,16 Lung Primary cancer 3,084 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__175_B2,17 Lung Primary cancer 2,285 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,2 Lung Primary cancer 1,910 0.25 0.19 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__175_B1,16 Lung Primary cancer 2,528 0.10 0.14 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B1,17 Lung Primary cancer 1,429 0.30 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,2 Lung Primary cancer 2,305 0.23 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,3 Lung Primary cancer 4,171 0.23 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,4 Lung Primary cancer 2,713 0.35 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,5 Lung Primary cancer 3,623 0.35 0.08 Highly modular Weakly segregated
NSCLC_38242124__IMC__175_B1,6 Lung Primary cancer 3,146 0.26 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,7 Lung Primary cancer 3,665 0.34 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,8 Lung Primary cancer 2,860 0.22 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B1,9 Lung Primary cancer 4,697 0.07 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B2,1 Lung Primary cancer 2,353 0.21 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,10 Lung Primary cancer 2,177 0.24 0.06 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,11 Lung Primary cancer 3,015 0.23 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,12 Lung Primary cancer 2,539 0.32 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,13 Lung Primary cancer 3,504 0.27 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,14 Lung Primary cancer 2,748 0.05 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__175_B2,15 Lung Primary cancer 3,020 0.25 0.07 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,16 Lung Primary cancer 3,084 0.21 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__175_B2,17 Lung Primary cancer 2,285 0.13 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__175_B2,2 Lung Primary cancer 1,910 0.25 0.14 Weakly structured Weakly segregated