scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B7,13 Lung Primary cancer 258 0.10 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,14 Lung Primary cancer 3,100 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,15 Lung Primary cancer 3,931 0.41 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B7,2 Lung Primary cancer 3,415 0.16 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,3 Lung Primary cancer 3,574 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,4 Lung Primary cancer 3,143 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,5 Lung Primary cancer 3,066 0.34 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,6 Lung Primary cancer 2,135 0.13 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,7 Lung Primary cancer 3,468 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,8 Lung Primary cancer 2,078 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,9 Lung Primary cancer 2,847 0.12 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B8,1 Lung Primary cancer 3,125 0.42 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B8,10 Lung Primary cancer 4,837 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,11 Lung Primary cancer 3,758 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B8,12 Lung Primary cancer 4,425 0.19 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,13 Lung Primary cancer 2,232 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B8,14 Lung Primary cancer 3,660 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,15 Lung Primary cancer 3,908 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B8,16 Lung Primary cancer 3,067 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B8,17 Lung Primary cancer 2,724 0.39 0.20 Highly modular Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B7,13 Lung Primary cancer 258 0.10 0.26 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,14 Lung Primary cancer 3,100 0.28 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,15 Lung Primary cancer 3,931 0.41 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B7,2 Lung Primary cancer 3,415 0.16 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,3 Lung Primary cancer 3,574 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,4 Lung Primary cancer 3,143 0.13 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B7,5 Lung Primary cancer 3,066 0.34 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,6 Lung Primary cancer 2,135 0.13 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B7,7 Lung Primary cancer 3,468 0.26 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,8 Lung Primary cancer 2,078 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B7,9 Lung Primary cancer 2,847 0.12 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B8,1 Lung Primary cancer 3,125 0.42 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B8,10 Lung Primary cancer 4,837 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,11 Lung Primary cancer 3,758 0.04 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B8,12 Lung Primary cancer 4,425 0.19 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,13 Lung Primary cancer 2,232 0.07 0.12 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B8,14 Lung Primary cancer 3,660 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,15 Lung Primary cancer 3,908 0.10 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B8,16 Lung Primary cancer 3,067 0.43 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B8,17 Lung Primary cancer 2,724 0.39 0.17 Highly modular Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B7,13 Lung Primary cancer 258 0.10 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B7,14 Lung Primary cancer 3,100 0.28 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B7,15 Lung Primary cancer 3,931 0.41 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B7,2 Lung Primary cancer 3,415 0.16 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B7,3 Lung Primary cancer 3,574 0.08 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B7,4 Lung Primary cancer 3,143 0.13 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B7,5 Lung Primary cancer 3,066 0.34 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B7,6 Lung Primary cancer 2,135 0.13 0.00 Homogeneous Neutral
NSCLC_38242124__IMC__87_B7,7 Lung Primary cancer 3,468 0.26 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B7,8 Lung Primary cancer 2,078 0.21 0.13 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B7,9 Lung Primary cancer 2,847 0.12 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B8,1 Lung Primary cancer 3,125 0.42 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B8,10 Lung Primary cancer 4,837 0.23 0.10 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B8,11 Lung Primary cancer 3,758 0.04 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B8,12 Lung Primary cancer 4,425 0.19 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B8,13 Lung Primary cancer 2,232 0.07 0.11 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B8,14 Lung Primary cancer 3,660 0.32 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B8,15 Lung Primary cancer 3,908 0.10 0.04 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B8,16 Lung Primary cancer 3,067 0.43 0.10 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B8,17 Lung Primary cancer 2,724 0.42 0.11 Highly modular Weakly segregated