scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Spatial Domain

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Spatial Domain (Tier 1)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B8,2 Lung Primary cancer 3,854 Tumor/Malignant 39.7% 0.93 0.23
NSCLC_38242124__IMC__87_B8,3 Lung Primary cancer 3,301 Tumor/Malignant 59.6% 0.99 0.05
NSCLC_38242124__IMC__87_B8,4 Lung Primary cancer 3,805 Tumor/Malignant 49.0% 1.00 0.03
NSCLC_38242124__IMC__87_B8,5 Lung Primary cancer 3,140 Tumor/Malignant 64.2% 0.97 0.14
NSCLC_38242124__IMC__87_B8,6 Lung Primary cancer 2,361 Tumor/Malignant 43.6% 0.89 0.33
NSCLC_38242124__IMC__87_B8,7 Lung Primary cancer 2,856 Tumor/Malignant 41.3% 0.98 0.09
NSCLC_38242124__IMC__87_B8,8 Lung Primary cancer 2,340 Tumor/Malignant 58.5% 0.96 0.15
NSCLC_38242124__IMC__87_B8,9 Lung Primary cancer 2,982 Tumor/Malignant 70.6% 0.97 0.11
NSCLC_38242124__IMC__87_C1,10 Lung Primary cancer 4,671 Tumor/Malignant 86.6% 0.98 0.05
NSCLC_38242124__IMC__87_C1,11 Lung Primary cancer 2,295 Tumor/Malignant 45.8% 0.90 0.28
NSCLC_38242124__IMC__87_C1,12 Lung Primary cancer 715 Stromal 30.8% 0.51 0.88
NSCLC_38242124__IMC__87_C1,13 Lung Primary cancer 2,169 Tumor/Malignant 38.1% 0.96 0.19
NSCLC_38242124__IMC__87_C1,14 Lung Primary cancer 2,979 Tumor/Malignant 45.2% 0.95 0.16
NSCLC_38242124__IMC__87_C1,15 Lung Primary cancer 3,514 Tumor/Malignant 48.6% 0.99 0.06
NSCLC_38242124__IMC__87_C1,16 Lung Primary cancer 5,764 Immune 92.2% 0.98 0.05
NSCLC_38242124__IMC__87_C1,17 Lung Primary cancer 1,021 Other 31.8% 0.42 0.94
NSCLC_38242124__IMC__87_C1,2 Lung Primary cancer 1,044 Stromal 35.3% 0.77 0.46
NSCLC_38242124__IMC__87_C1,3 Lung Primary cancer 3,895 Tumor/Malignant 67.8% 0.98 0.09
NSCLC_38242124__IMC__87_C1,4 Lung Primary cancer 3,694 Tumor/Malignant 35.0% 0.86 0.36
NSCLC_38242124__IMC__87_C1,5 Lung Primary cancer 3,643 Tumor/Malignant 71.9% 0.97 0.09

Spatial Domain (Tier 2)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B8,2 Lung Primary cancer 3,854 Tumor/Malignant 37.6% 0.94 0.21
NSCLC_38242124__IMC__87_B8,3 Lung Primary cancer 3,301 Tumor/Malignant 57.4% 1.00 0.03
NSCLC_38242124__IMC__87_B8,4 Lung Primary cancer 3,805 Tumor/Malignant 49.2% 1.00 0.03
NSCLC_38242124__IMC__87_B8,5 Lung Primary cancer 3,140 Tumor/Malignant 54.3% 0.99 0.08
NSCLC_38242124__IMC__87_B8,6 Lung Primary cancer 2,361 Tumor/Malignant 39.8% 0.89 0.32
NSCLC_38242124__IMC__87_B8,7 Lung Primary cancer 2,856 Tumor/Malignant 41.4% 0.98 0.10
NSCLC_38242124__IMC__87_B8,8 Lung Primary cancer 2,340 Tumor/Malignant 44.2% 1.00 0.06
NSCLC_38242124__IMC__87_B8,9 Lung Primary cancer 2,982 Tumor/Malignant 60.3% 0.99 0.05
NSCLC_38242124__IMC__87_C1,10 Lung Primary cancer 4,671 Tumor/Malignant 73.8% 0.99 0.04
NSCLC_38242124__IMC__87_C1,11 Lung Primary cancer 2,295 Tumor/Malignant 29.6% 0.73 0.59
NSCLC_38242124__IMC__87_C1,12 Lung Primary cancer 715 Stromal 30.2% 0.51 0.88
NSCLC_38242124__IMC__87_C1,13 Lung Primary cancer 2,169 Tumor/Malignant 36.1% 0.96 0.16
NSCLC_38242124__IMC__87_C1,14 Lung Primary cancer 2,979 Tumor/Malignant 41.5% 0.98 0.10
NSCLC_38242124__IMC__87_C1,15 Lung Primary cancer 3,514 Tumor/Malignant 48.6% 0.99 0.06
NSCLC_38242124__IMC__87_C1,16 Lung Primary cancer 5,764 Lymphoid 87.1% 1.00 0.02
NSCLC_38242124__IMC__87_C1,17 Lung Primary cancer 1,021 Other 27.7% 0.55 0.85
NSCLC_38242124__IMC__87_C1,2 Lung Primary cancer 1,044 Stromal 27.3% 0.54 0.69
NSCLC_38242124__IMC__87_C1,3 Lung Primary cancer 3,895 Tumor/Malignant 64.3% 0.99 0.07
NSCLC_38242124__IMC__87_C1,4 Lung Primary cancer 3,694 Tumor/Malignant 25.8% 0.93 0.25
NSCLC_38242124__IMC__87_C1,5 Lung Primary cancer 3,643 Tumor/Malignant 57.0% 0.97 0.08

Spatial Domain (Tier 3)

2,069 ready
Sample Organ Disease state Cells Dominant compartment ?Largest Tier 1 spatial domain by sample fraction; this is a biological neighborhood label, not a row-count summary. Domain share Purity Diversity
NSCLC_38242124__IMC__87_B8,2 Lung Primary cancer 3,854 Tumor/Malignant cell 41.5% 0.92 0.26
NSCLC_38242124__IMC__87_B8,3 Lung Primary cancer 3,301 Tumor/Malignant cell 67.8% 0.97 0.11
NSCLC_38242124__IMC__87_B8,4 Lung Primary cancer 3,805 Tumor/Malignant cell 65.7% 0.96 0.15
NSCLC_38242124__IMC__87_B8,5 Lung Primary cancer 3,140 Tumor/Malignant cell 64.1% 0.97 0.14
NSCLC_38242124__IMC__87_B8,6 Lung Primary cancer 2,361 Tumor/Malignant cell 40.3% 0.90 0.31
NSCLC_38242124__IMC__87_B8,7 Lung Primary cancer 2,856 Tumor/Malignant cell 41.9% 0.97 0.11
NSCLC_38242124__IMC__87_B8,8 Lung Primary cancer 2,340 Tumor/Malignant cell 64.7% 0.94 0.21
NSCLC_38242124__IMC__87_B8,9 Lung Primary cancer 2,982 Tumor/Malignant cell 60.3% 0.99 0.05
NSCLC_38242124__IMC__87_C1,10 Lung Primary cancer 4,671 Tumor/Malignant cell 86.5% 0.98 0.05
NSCLC_38242124__IMC__87_C1,11 Lung Primary cancer 2,295 Tumor/Malignant cell 47.0% 0.90 0.30
NSCLC_38242124__IMC__87_C1,12 Lung Primary cancer 715 Fibroblast 30.2% 0.75 0.48
NSCLC_38242124__IMC__87_C1,13 Lung Primary cancer 2,169 Tumor/Malignant cell 38.5% 0.96 0.20
NSCLC_38242124__IMC__87_C1,14 Lung Primary cancer 2,979 Tumor/Malignant cell 44.5% 0.95 0.15
NSCLC_38242124__IMC__87_C1,15 Lung Primary cancer 3,514 Tumor/Malignant cell 63.2% 0.96 0.16
NSCLC_38242124__IMC__87_C1,16 Lung Primary cancer 5,764 B cell 74.9% 0.99 0.04
NSCLC_38242124__IMC__87_C1,17 Lung Primary cancer 1,021 Other 30.6% 0.77 0.58
NSCLC_38242124__IMC__87_C1,2 Lung Primary cancer 1,044 Fibroblast 36.3% 0.74 0.55
NSCLC_38242124__IMC__87_C1,3 Lung Primary cancer 3,895 Tumor/Malignant cell 68.0% 0.98 0.09
NSCLC_38242124__IMC__87_C1,4 Lung Primary cancer 3,694 Tumor/Malignant cell 34.9% 0.86 0.39
NSCLC_38242124__IMC__87_C1,5 Lung Primary cancer 3,643 Tumor/Malignant cell 71.8% 0.97 0.09