scAtria single-cell spatial atlas resource

NSCLC_38242124 · IMC / Imaging Mass Cytometry

NSCLC_38242124 · NSCLC_38242124__IMC

IMC / Imaging Mass Cytometry Spatial proteomics Curated Tiered

Network Topology

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Network Topology (Tier 1)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B8,2 Lung Primary cancer 3,854 0.27 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,3 Lung Primary cancer 3,301 0.22 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,4 Lung Primary cancer 3,805 0.24 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,5 Lung Primary cancer 3,140 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B8,6 Lung Primary cancer 2,361 0.30 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,7 Lung Primary cancer 2,856 0.44 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B8,8 Lung Primary cancer 2,340 0.21 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,9 Lung Primary cancer 2,982 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,10 Lung Primary cancer 4,671 0.17 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,11 Lung Primary cancer 2,295 0.29 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,12 Lung Primary cancer 715 0.09 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,13 Lung Primary cancer 2,169 0.32 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,14 Lung Primary cancer 2,979 0.38 0.20 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C1,15 Lung Primary cancer 3,514 0.23 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,16 Lung Primary cancer 5,764 0.04 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,17 Lung Primary cancer 1,021 0.07 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,2 Lung Primary cancer 1,044 0.10 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,3 Lung Primary cancer 3,895 0.08 0.20 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,4 Lung Primary cancer 3,694 0.26 0.20 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,5 Lung Primary cancer 3,643 0.26 0.20 Weakly structured Highly compartmentalized

Network Topology (Tier 2)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B8,2 Lung Primary cancer 3,854 0.27 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,3 Lung Primary cancer 3,301 0.22 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,4 Lung Primary cancer 3,805 0.24 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,5 Lung Primary cancer 3,140 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_B8,6 Lung Primary cancer 2,361 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,7 Lung Primary cancer 2,856 0.44 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_B8,8 Lung Primary cancer 2,340 0.21 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_B8,9 Lung Primary cancer 2,982 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,10 Lung Primary cancer 4,671 0.17 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,11 Lung Primary cancer 2,295 0.29 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,12 Lung Primary cancer 715 0.09 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,13 Lung Primary cancer 2,169 0.32 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,14 Lung Primary cancer 2,979 0.38 0.17 Highly modular Highly compartmentalized
NSCLC_38242124__IMC__87_C1,15 Lung Primary cancer 3,514 0.23 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,16 Lung Primary cancer 5,764 0.04 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C1,17 Lung Primary cancer 1,021 0.07 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,2 Lung Primary cancer 1,044 0.10 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,3 Lung Primary cancer 3,895 0.08 0.17 Homogeneous Highly compartmentalized
NSCLC_38242124__IMC__87_C1,4 Lung Primary cancer 3,694 0.30 0.17 Weakly structured Highly compartmentalized
NSCLC_38242124__IMC__87_C1,5 Lung Primary cancer 3,643 0.26 0.17 Weakly structured Highly compartmentalized

Network Topology (Tier 3)

2,069 ready
Sample Organ Disease state Cells Q modularity ?Delaunay graph modularity: Q < 0.15 homogeneous; 0.15-0.35 weakly structured; Q >= 0.35 highly modular. r assortativity ?Delaunay graph assortativity: r <= -0.15 highly dispersed; -0.15 to -0.02 weakly mixed; -0.02 to 0.02 neutral; 0.02 to 0.15 weakly segregated; r >= 0.15 highly compartmentalized. Modularity rank Assortativity rank
NSCLC_38242124__IMC__87_B8,2 Lung Primary cancer 3,854 0.27 0.14 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B8,3 Lung Primary cancer 3,301 0.22 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B8,4 Lung Primary cancer 3,805 0.24 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B8,5 Lung Primary cancer 3,140 0.09 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_B8,6 Lung Primary cancer 2,361 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B8,7 Lung Primary cancer 2,856 0.44 0.13 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_B8,8 Lung Primary cancer 2,340 0.21 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_B8,9 Lung Primary cancer 2,982 0.10 0.13 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C1,10 Lung Primary cancer 4,671 0.17 0.12 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C1,11 Lung Primary cancer 2,295 0.29 0.08 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C1,12 Lung Primary cancer 715 0.11 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C1,13 Lung Primary cancer 2,169 0.32 0.09 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C1,14 Lung Primary cancer 2,979 0.38 0.11 Highly modular Weakly segregated
NSCLC_38242124__IMC__87_C1,15 Lung Primary cancer 3,514 0.23 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C1,16 Lung Primary cancer 5,764 0.05 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C1,17 Lung Primary cancer 1,021 0.08 0.09 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C1,2 Lung Primary cancer 1,044 0.13 0.10 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C1,3 Lung Primary cancer 3,895 0.08 0.08 Homogeneous Weakly segregated
NSCLC_38242124__IMC__87_C1,4 Lung Primary cancer 3,694 0.30 0.11 Weakly structured Weakly segregated
NSCLC_38242124__IMC__87_C1,5 Lung Primary cancer 3,643 0.26 0.10 Weakly structured Weakly segregated